当前解析结果
SmilChr05G004026| 统一新 Gene ID | SmilChr05G004026 |
|---|---|
| 名称 | SmilChr05G004026 |
| 描述 | putative nucleobase-ascorbate transporter 10 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54252904 - 54255876 / + |
| NCBI Gene ID | LOC131025091 |
|---|---|
| GeneID | 131025091 |
| locus_tag | - |
| NCBI Name | LOC131025091 |
| 原始查询 | LOC131025091 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative nucleobase-ascorbate transporter 10 |
| 产物 | putative nucleobase-ascorbate transporter 10 |
| Arabidopsis | AT1G65550 (AT1G65550)Xanthine/uracil permease family protein [Source:NCBI gene (formerly Entrezgene);Acc:842866] identity=58.1; qcov=0.91; evalue=1.58e-168; confidence=high |
| Rice | Os02g0741800- identity=60.7; qcov=0.872; evalue=7.18e-171; confidence=high |
| GO | GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00860 (Xan_ur_permease) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025091 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057810680.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057810678.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057810678.1 |
| 4 | Vacuole | 液泡 | 0.40000 | XP_057810678.1 |
| 5 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057810678.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54253080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,C36 |
Chr5:54253082 |
C |
CT |
1bp_insertion | frameshift_variant | 3 | B34,B41,C6 |
Chr5:54253082 |
C |
CT |
1bp_insertion | CDS_variant | 3 | B34,B41,C6 |
Chr5:54253099 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr5:54253167 |
ACC |
A |
2bp_deletion | frameshift_variant | 82 | A16,A18,A19,A24,A9,B103,B107,B115,B122,B124,B130,B132,B135,B136,B139,B16,B2,B20,B23,B24,B26,B28,B29,B35,B40,B42,B43,B44,B5,B53,B55,B56,B59,B6,B61,B62,B65,B66,B68,B71,B73,B77,B8,B80,B86,B88,B89,B94,B96,B97,B99,C1,C10,C11,C12,C14,C19,C20,C22,C24,C28,C33,C34,C35,C4,C40,C45,C46,C47,C57,C58,C60,C63,C67,C68,C69,C70,C8,C86,D11,D7,D8 |
Chr5:54253179 |
ACC |
* |
2bp_deletion | CDS_variant | 5 | B122,B29,B97,C1,D7 |
Chr5:54253190 |
T |
TA |
1bp_insertion | frameshift_variant | 53 | A1,A10,A14,A16,A6,B102,B105,B106,B109,B110,B112,B125,B128,B129,B136,B137,B36,B37,B41,B49,B67,B71,B72,B79,B87,B88,B9,B97,C15,C17,C19,C27,C4,C44,C48,C49,C52,C54,C55,C56,C57,C58,C6,C63,C65,C76,C79,C83,D11,D2,D3,D5,D6 |
Chr5:54253197 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B10 |
Chr5:54253197 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B10 |
Chr5:54253238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,C36 |
Chr5:54253734 |
T |
TG |
1bp_insertion | frameshift_variant | 5 | A24,B124,B7,B78,C78 |
Chr5:54253734 |
T |
TG |
1bp_insertion | CDS_variant | 5 | A24,B124,B7,B78,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810678.1PF00860
Xan_ur_permease 81-350 aa
XP_057810679.1PF00860
Xan_ur_permease 81-350 aa
XP_057810680.1PF00860
Xan_ur_permease 81-479 aa
XP_057810681.1PF00860
Xan_ur_permease 81-436 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810678.1 |
Pfam | PF00860 |
Xan_ur_permease | Family | 81 | 350 | 2.8e-31 | 109.3 | Permease family |
XP_057810679.1 |
Pfam | PF00860 |
Xan_ur_permease | Family | 81 | 350 | 2.4e-31 | 109.5 | Permease family |
XP_057810680.1 |
Pfam | PF00860 |
Xan_ur_permease | Family | 81 | 479 | 1e-60 | 206.2 | Permease family |
XP_057810681.1 |
Pfam | PF00860 |
Xan_ur_permease | Family | 81 | 436 | 1.6e-53 | 182.5 | Permease family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。