当前解析结果
SmilChr05G004029| 统一新 Gene ID | SmilChr05G004029 |
|---|---|
| 名称 | SmilChr05G004029 |
| 描述 | receptor protein kinase-like protein ZAR1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54301039 - 54303721 / + |
| NCBI Gene ID | LOC131025093 |
|---|---|
| GeneID | 131025093 |
| locus_tag | - |
| NCBI Name | LOC131025093 |
| 原始查询 | LOC131025093 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor protein kinase-like protein ZAR1 |
| 产物 | receptor protein kinase-like protein ZAR1 |
| Arabidopsis | AT2G01210 (AT2G01210)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:814649] identity=58.9; qcov=1.06; evalue=0; confidence=high |
| Rice | Os01g0514700- identity=57.1; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025093 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057810683.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057810683.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057810683.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057810683.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057810683.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54301562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C53,C62 |
Chr5:54301718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:54301746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr5:54301781 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr5:54301939 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:54302074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:54302094 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr5:54302419 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr5:54302430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B31,C52 |
Chr5:54302484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,B41 |
Chr5:54302490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr5:54302603 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B1,B2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810683.1PF08263
LRRNT_2 24-64 aa
PF00560
LRR_1 93-112 aa
PF00560
LRR_1 117-138 aa
PF00560
LRR_1 164-185 aa
PF00560
LRR_1 190-211 aa
PF00560
LRR_1 217-236 aa
PF00069
Pkinase 410-669 aa
PF07714
PK_Tyr_Ser-Thr 410-672 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810683.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 24 | 64 | 1.1e-14 | 55.1 | Leucine rich repeat N-terminal domain |
XP_057810683.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 93 | 112 | 4.1e-18 | 62.3 | Leucine Rich Repeat |
XP_057810683.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 117 | 138 | 4.1e-18 | 62.3 | Leucine Rich Repeat |
XP_057810683.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 164 | 185 | 4.1e-18 | 62.3 | Leucine Rich Repeat |
XP_057810683.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 190 | 211 | 4.1e-18 | 62.3 | Leucine Rich Repeat |
XP_057810683.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 217 | 236 | 4.1e-18 | 62.3 | Leucine Rich Repeat |
XP_057810683.1 |
Pfam | PF00069 |
Pkinase | Domain | 410 | 669 | 1.2e-32 | 114.0 | Protein kinase domain |
XP_057810683.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 410 | 672 | 1.8e-31 | 110.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。