Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002403

染色体: Chr01 坐标: 41388359-41392010 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002403
名称SmilChr01G002403
描述cation/H(+) antiporter 15
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向41388359 - 41392010 / +

ID 对照

NCBI Gene IDLOC131025109
GeneID131025109
locus_tag-
NCBI NameLOC131025109
原始查询LOC131025109

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cation/H(+) antiporter 15
产物cation/H(+) antiporter 15
ArabidopsisAT2G13620 (CHX15)
cation/hydrogen exchanger 15 [Source:NCBI gene (formerly Entrezgene);Acc:815847]
identity=72.4; qcov=0.989; evalue=0; confidence=high
RiceOs05g0485000 (OsCHX16)
-
identity=57.2; qcov=0.954; evalue=0; confidence=high
GOGO:0006885 (regulation of pH); GO:0012505 (endomembrane system); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport)
KEGG-
PfamPF00999 (Na_H_Exchanger); PF23256 (CHX17_2nd); PF23259 (CHX17_C)
InterPro-
eggNOG-
NRGeneID:131025109

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057810706.1
2 Nucleus 细胞核 0.00000 XP_057810706.1
3 Chromosome 染色体 0.00000 XP_057810706.1
4 Centromere 着丝粒 0.00000 XP_057810706.1
5 Chromatin 染色质 0.00000 XP_057810706.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:41389679 C T EMS_canonical_SNV CDS_variant 4 B128,B99,C83,C85
Chr1:41390045 C T EMS_canonical_SNV CDS_variant 3 B26,B4,B61
Chr1:41390243 G A EMS_canonical_SNV CDS_variant 3 B68,C42,D10
Chr1:41390444 G A EMS_canonical_SNV CDS_variant 1 A11
Chr1:41390678 C T EMS_canonical_SNV CDS_variant 2 B104,C55
Chr1:41390751 GT G 1bp_deletion frameshift_variant 1 B75
Chr1:41390751 GT G 1bp_deletion CDS_variant 1 B75
Chr1:41390763 G A EMS_canonical_SNV CDS_variant 1 B75
Chr1:41390852 CCA C 2bp_deletion frameshift_variant 1 C7
Chr1:41390852 CCA C 2bp_deletion CDS_variant 1 C7
Chr1:41390978 C T EMS_canonical_SNV CDS_variant 1 B84
Chr1:41391513 G A EMS_canonical_SNV CDS_variant 2 B132,B41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057810706.1
825 aa
N
1
412
825
Na_H_Exchanger
CHX17_2nd
CHX17_C
C
PF00999 Na_H_Exchanger 50-429 aa PF23256 CHX17_2nd 487-612 aa PF23259 CHX17_C 626-784 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810706.1 Pfam PF00999 Na_H_Exchanger Domain 50 429 9.4e-64 216.3 Sodium/hydrogen exchanger, transmembrane
XP_057810706.1 Pfam PF23256 CHX17_2nd Domain 487 612 8.6e-51 172.0 Plant cation/H(+) antiporter domain
XP_057810706.1 Pfam PF23259 CHX17_C Domain 626 784 8.8e-48 162.8 Plant cation/H(+) antiporter, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057954723.1
CATTGTTATAGTCCAACATTCCAAACTCTCTTCTGGCAGAAATTCAATCAAATTTTACCACAAACATTGCTAAATAGATTCGGCCATCCTTAATTTCCCAATATAGACAATCCCCTTGAAACGTACTAACCATGCAAAAAATTCCTCATGCAGCGGCCCACCGCTCAAAACAATCCACAATTTTCCCAAGCAAAAAATCATTAACAGAAAAATGACAAAATCAAATACAGTTTTAGTTCTTCTCTTGAATTTTCAGCCGA...

CDS

1 records

下载 CDS FASTA
LOC131025109
ATGGCGGAGGCGAAGAACAAAACGGATCAGATGATAGTATGCTACGCTCCAACGATGATTACAACCAACGGCATTTGGCAAGGCGATAACCCTTTGGATTATTCTCTGCCGCTCTTCATCTTGCAGCTAACCCTCGTTGTCGTCACCACTCGTATCCTCGTTTTCGCCCTCAAACCCCTCCGCCAGCCTCGTGTCATCTCCGAGATCCTTGGTGGCATAATCCTGGGCCCATCGGTGCTGGGACGAAGCAAGAACTTCGC...

Protein

1 records

下载 Protein FASTA
XP_057810706.1
MAEAKNKTDQMIVCYAPTMITTNGIWQGDNPLDYSLPLFILQLTLVVVTTRILVFALKPLRQPRVISEILGGIILGPSVLGRSKNFADTIFPLRSVMVLETMANVGLLYFLFLIGVEMDITVIKRTGKKALVIAVAGMILPFLIGISFAFVLHEKSEFVRLGTFILFLGVALSVTSFPVLARILAELKLLNSEIGRLAMSSALINDMCAWILLAFAIALAENEATSLASLWVILSSGLFVVFCVYIVRPLIAWMIRRSPE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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