当前解析结果
SmilChr05G004053| 统一新 Gene ID | SmilChr05G004053 |
|---|---|
| 名称 | SmilChr05G004053 |
| 描述 | protein DETOXIFICATION 16-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54498761 - 54501562 / + |
| NCBI Gene ID | LOC131025114 |
|---|---|
| GeneID | 131025114 |
| locus_tag | - |
| NCBI Name | LOC131025114 |
| 原始查询 | LOC131025114 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein DETOXIFICATION 16-like |
| 产物 | protein DETOXIFICATION 16-like |
| Arabidopsis | AT5G52450 (AT5G52450)MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:835321] identity=57.7; qcov=0.969; evalue=0; confidence=high |
| Rice | Os06g0494400- identity=59.5; qcov=0.936; evalue=0; confidence=high |
| GO | GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane) |
| KEGG | - |
| Pfam | PF01554 (MatE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025114 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057810712.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057810712.1 |
| 3 | Vacuole | 液泡 | 0.60000 | XP_057810712.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057810712.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057810712.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54499479 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr5:54499555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,B122,B138,C31,C71 |
Chr5:54499606 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A22,B106,B16,B18,B36,C25,C45,C73 |
Chr5:54499611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr5:54499676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr5:54499700 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C16 |
Chr5:54500069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B72,B90,B92,C21 |
Chr5:54500183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B138,C31,C71,D1 |
Chr5:54500211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B31,B72,B90,C21,C52 |
Chr5:54500242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B140,C82,D7 |
Chr5:54500318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr5:54500337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B115,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057810712.1PF01554
MatE 47-207 aa
PF01554
MatE 269-431 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810712.1 |
Pfam | PF01554 |
MatE | Family | 47 | 207 | 9.3e-59 | 198.4 | MatE |
XP_057810712.1 |
Pfam | PF01554 |
MatE | Family | 269 | 431 | 9.3e-59 | 198.4 | MatE |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。