Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002407`

染色体: Chr01 坐标: 41422960-41441271 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002407`
名称	SmilChr01G002407
描述	copalyl diphosphate synthase 1, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	41422960 - 41441271 / `+`

ID 对照

NCBI Gene ID	`LOC131025133`
GeneID	`131025133`
locus_tag	`-`
NCBI Name	`LOC131025133`
原始查询	`LOC131025133`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	copalyl diphosphate synthase 1, chloroplastic-like
产物	copalyl diphosphate synthase 1%2C chloroplastic-like
Arabidopsis	`AT4G02780` (GA1) Terpenoid cyclases/Protein prenyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828182] identity=50.2; qcov=0.713; evalue=0; confidence=high
Rice	`Os04g0178300` (OsCPS4) - identity=40; qcov=0.974; evalue=0; confidence=medium
GO	GO:0000287 (magnesium ion binding); GO:0009507 (chloroplast); GO:0009686 (gibberellin biosynthetic process); GO:0010333 (terpene synthase activity)
KEGG	-
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C)
InterPro	-
eggNOG	-
NR	GeneID:131025133

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.60000	`XP_057810735.1`
2	Cytoplasm	细胞质	0.40000	`XP_057810735.1`
3	Cytosol	细胞质基质	0.40000	`XP_057810735.1`
4	Chloroplast stroma	叶绿体基质	0.20000	`XP_057810735.1`
5	Nucleus	细胞核	0.00000	`XP_057810735.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:41422994`	`T`	`TC`	1bp_insertion	frameshift_variant	11	A20,B107,B123,B34,B64,C35,C57,C75,C87,C9,D9
`Chr1:41423069`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,C20,C61
`Chr1:41423234`	`A`	`ATG`	2bp_insertion	frameshift_variant	3	B26,B4,B61
`Chr1:41423234`	`A`	`ATG`	2bp_insertion	CDS_variant	3	B26,B4,B61
`Chr1:41423239`	`C`	`CAT`	2bp_insertion	frameshift_variant	3	B26,B4,B61
`Chr1:41423239`	`C`	`CAT`	2bp_insertion	CDS_variant	3	B26,B4,B61
`Chr1:41428510`	`AC`	`*`	1bp_deletion	CDS_variant	1	B100
`Chr1:41428560`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr1:41436315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B4,C12,C29
`Chr1:41436398`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B5,C71,D9
`Chr1:41436400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B109,C79
`Chr1:41436470`	`TAA`	`T`	2bp_deletion	frameshift_variant	4	B128,B32,B33,C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810735.1

794 aa

397

794

Terpene_synth

PF01397 Terpene_synth 266-468 aa

XP_057810743.1

727 aa

364

727

Terpene_synth

Terpene_synth_C

PF01397 Terpene_synth 266-468 aa PF03936 Terpene_synth_C 544-664 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810735.1`	Pfam	`PF01397`	Terpene_synth	Repeat	266	468	1e-41	143.5	Terpene synthase, N-terminal domain
`XP_057810743.1`	Pfam	`PF01397`	Terpene_synth	Repeat	266	468	8.2e-42	143.8	Terpene synthase, N-terminal domain
`XP_057810743.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	544	664	1.7e-07	31.5	Terpene synthase family, metal binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954752.1
CCTGTATATACTTTCGTTCGCTAATTAGTTTAGATGATCTCTCTTTGCTTTTTAGGAATGGGATCCATAATATTTACTCCAAATCTGAGCTATTCCCTTCTAGGAGAAGGCAAGAATATTCTTTCAGCAAAACTTCAGCTGCCGCAGAGTTTAACTGGAACATGGCTGAAAAACAGAGAATACACGCGCGCAAATAACCAATCTCATCGTCGTCGGAAACATATATTTAAAGTATTTGAGAATCGAGTTGCTCATGAGGA...

XM_057954760.1
CCTGTATATACTTTCGTTCGCTAATTAGTTTAGATGATCTCTCTTTGCTTTTTAGGAATGGGATCCATAATATTTACTCCAAATCTGAGCTATTCCCTTCTAGGAGAAGGCAAGAATATTCTTTCAGCAAAACTTCAGCTGCCGCAGAGTTTAACTGGAACATGGCTGAAAAACAGAGAATACACGCGCGCAAATAACCAATCTCATCGTCGTCGGAAACATATATTTAAAGTATTTGAGAATCGAGTTGCTCATGAGGA...

CDS

2 records

下载 CDS FASTA

LOC131025133
ATGATCTCTCTTTGCTTTTTAGGAATGGGATCCATAATATTTACTCCAAATCTGAGCTATTCCCTTCTAGGAGAAGGCAAGAATATTCTTTCAGCAAAACTTCAGCTGCCGCAGAGTTTAACTGGAACATGGCTGAAAAACAGAGAATACACGCGCGCAAATAACCAATCTCATCGTCGTCGGAAACATATATTTAAAGTATTTGAGAATCGAGTTGCTCATGAGGATGGTTCTACTGCTGAGGCCGTCGAAGTGAATAA...

Protein

2 records

下载 Protein FASTA

XP_057810735.1
MISLCFLGMGSIIFTPNLSYSLLGEGKNILSAKLQLPQSLTGTWLKNREYTRANNQSHRRRKHIFKVFENRVAHEDGSTAEAVEVNNKIKDMISCIKILMVTIKEGRISVSAYDTAWIALIKNIDGFDTPQFPSSLEWVLQNQHPDGSWGDEHFFSVYDRLLNTMACIIALKSWNVGTHNMEKGISYVKKNVWKLEDASEAHMTCGFEVIYPALVRKASHLGIHDIPIPNNIYTARDHKLNKIPKELMHQVTTTLLYSLE...

XP_057810743.1
MISLCFLGMGSIIFTPNLSYSLLGEGKNILSAKLQLPQSLTGTWLKNREYTRANNQSHRRRKHIFKVFENRVAHEDGSTAEAVEVNNKIKDMISCIKILMVTIKEGRISVSAYDTAWIALIKNIDGFDTPQFPSSLEWVLQNQHPDGSWGDEHFFSVYDRLLNTMACIIALKSWNVGTHNMEKGISYVKKNVWKLEDASEAHMTCGFEVIYPALVRKASHLGIHDIPIPNNIYTARDHKLNKIPKELMHQVTTTLLYSLE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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