Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004076`

染色体: Chr05 坐标: 54643126-54646127 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004076`
名称	SmilChr05G004076
描述	uncharacterized SmilChr05G004076
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	54643126 - 54646127 / `+`

ID 对照

NCBI Gene ID	`LOC131025139`
GeneID	`131025139`
locus_tag	`-`
NCBI Name	`LOC131025139`
原始查询	`LOC131025139`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0121200; species=rice; confidence=high
产物	hit=Os01g0121200; species=rice; confidence=high
Arabidopsis	`AT2G01275` (AT2G01275) RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814655] identity=54.4; qcov=0.908; evalue=1.42e-87; confidence=high
Rice	`Os01g0121200` - identity=59; qcov=0.877; evalue=1.38e-99; confidence=high
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0008270 (zinc ion binding); GO:0016020 (membrane); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF12428 (DUF3675); PF12906 (RINGv)
InterPro	-
eggNOG	-
NR	GeneID:131025139

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057810738.1`
2	Vacuole membrane	液泡膜	0.40000	`XP_057810738.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057810738.1`
4	Vacuole	液泡	0.20000	`XP_057810738.1`
5	Nucleus	细胞核	0.00000	`XP_057810738.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:54644219`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr5:54644345`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,A7,D11
`Chr5:54644377`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:54645089`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B17,B30,C40
`Chr5:54645293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr5:54645311`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr5:54645333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B18,B64,D5
`Chr5:54645586`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr5:54645622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr5:54645804`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B131,B53,B81
`Chr5:54645824`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr5:54645850`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810738.1

261 aa

130

261

RINGv

DUF3675

PF12906 RINGv 59-104 aa PF12428 DUF3675 110-226 aa

XP_057810739.1

261 aa

130

261

RINGv

DUF3675

PF12906 RINGv 59-104 aa PF12428 DUF3675 110-226 aa

XP_057810740.1

261 aa

130

261

RINGv

DUF3675

PF12906 RINGv 59-104 aa PF12428 DUF3675 110-226 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810738.1`	Pfam	`PF12906`	RINGv	Domain	59	104	2e-13	50.9	RING-variant domain
`XP_057810738.1`	Pfam	`PF12428`	DUF3675	Family	110	226	1.1e-43	149.3	Protein of unknown function (DUF3675)
`XP_057810739.1`	Pfam	`PF12906`	RINGv	Domain	59	104	2e-13	50.9	RING-variant domain
`XP_057810739.1`	Pfam	`PF12428`	DUF3675	Family	110	226	1.1e-43	149.3	Protein of unknown function (DUF3675)
`XP_057810740.1`	Pfam	`PF12906`	RINGv	Domain	59	104	2e-13	50.9	RING-variant domain
`XP_057810740.1`	Pfam	`PF12428`	DUF3675	Family	110	226	1.1e-43	149.3	Protein of unknown function (DUF3675)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057954755.1
CACTATTCTATTCTCGGACTGTTTTTTCTTTTTTCCCAATTTTTTTTTTCCTCATTTTTTGAACTTCGAAAAAGCTCCCCTCTCTCTCTCTGCGCGCGTGTATATATTATGTAGAGGCATGATTGCATACAACAATTGTGTATTTGAACAAGAGAAAACTTGAATCACATTTTGAACACTCAATCTGTTGCTTTAGCTAGAAAAGAAAAGGAGAGATTTCTTAGCTTTCAGATTATCCGATACCCTTCTTGTGAGGGCTC...

XM_057954756.1
GTTTTTTCTTTTTTCCCAATTTTTTTTTTCCTCATTTTTTGAACTTCGAAAAAGCTCCCCTCTCTCTCTCTGCGCGCGTGTATATATTATGTAGAGGCATGATTGCATACAACAATTGTGTATTTGAACAAGAGAAAACTTGAATCACATTTTGAACACTCAATCTGTTGCTTTAGCTAGAAAAGAAAAGGAGAGATTTCTTAGCTTTCAGATTATCCGATACCCTTCTTGTAAGTCTCTCTTTTCTTTTCTATGTATAT...

CDS

3 records

下载 CDS FASTA

LOC131025139
ATGGGGGATCACTTTGTTTTGCTGGTTGATCGTTTGCTTACTGAATCGACTCTGGAGGCTGCAATTGAGAGTAGATTGAAGCAGGCAGTTCCCATCACTGTGGATGAAGCAGCAATCGACTATTCATACCAGAAAGACTCCGATGGTAGTTTGTCTCCGAGGAAGGTGGTCGAGTGCAGGATATGCCAGGATGAAGGTTTTGATTCGAGCATGGAGGCTCCATGCTCTTGCTCTGGAAGCTTGAAGTATGCTCACCGTAG...

Protein

3 records

下载 Protein FASTA

XP_057810738.1
MGDHFVLLVDRLLTESTLEAAIESRLKQAVPITVDEAAIDYSYQKDSDGSLSPRKVVECRICQDEGFDSSMEAPCSCSGSLKYAHRRCVQKWCNEKGDTMCEICHQQFKPGYTAPPPIFRFGGLPMNLRGNWQIARRDLNNPRIIAMVAADHSFLDPEYDEYAVSTSRSIVCCRTVAIIFMVLLIMRHTLPVVVSRAGNYSLPLIMLLVLRVAGIILPICIILKAVTSIIRRRQQQATTPPASDEESSPLPLNGPDLNAV...

XP_057810739.1
MGDHFVLLVDRLLTESTLEAAIESRLKQAVPITVDEAAIDYSYQKDSDGSLSPRKVVECRICQDEGFDSSMEAPCSCSGSLKYAHRRCVQKWCNEKGDTMCEICHQQFKPGYTAPPPIFRFGGLPMNLRGNWQIARRDLNNPRIIAMVAADHSFLDPEYDEYAVSTSRSIVCCRTVAIIFMVLLIMRHTLPVVVSRAGNYSLPLIMLLVLRVAGIILPICIILKAVTSIIRRRQQQATTPPASDEESSPLPLNGPDLNAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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