当前解析结果
SmilChr05G004079| 统一新 Gene ID | SmilChr05G004079 |
|---|---|
| 名称 | SmilChr05G004079 |
| 描述 | probable 6-phosphogluconolactonase 2 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54656106 - 54659439 / - |
| NCBI Gene ID | LOC131025142 |
|---|---|
| GeneID | 131025142 |
| locus_tag | - |
| NCBI Name | LOC131025142 |
| 原始查询 | LOC131025142 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable 6-phosphogluconolactonase 2 |
| 产物 | probable 6-phosphogluconolactonase 2 |
| Arabidopsis | AT1G13700 (PGL1)6-phosphogluconolactonase 1 [Source:NCBI gene (formerly Entrezgene);Acc:837931] identity=63.8; qcov=1.01; evalue=1.57e-122; confidence=high |
| Rice | Os07g0604000- identity=67.7; qcov=0.966; evalue=9.61e-134; confidence=high |
| GO | GO:0005975 (carbohydrate metabolic process); GO:0006098 (pentose-phosphate shunt); GO:0017057 (6-phosphogluconolactonase activity) |
| KEGG | smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01182 (Glucosamine_iso) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025142 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057810744.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057810744.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057810744.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810744.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810744.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54656352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B7 |
Chr5:54656385 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B18,B55,B64,C85,D5 |
Chr5:54656396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:54656414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C20,C79 |
Chr5:54656510 |
CG |
C |
1bp_deletion | frameshift_variant | 13 | B126,B13,B41,B51,B76,B93,C14,C2,C28,C5,C56,C74,C80 |
Chr5:54656519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B126,B41,B51,C5 |
Chr5:54656572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr5:54656583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B17,B30,B68,C40 |
Chr5:54656652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:54656664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr5:54656718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B85 |
Chr5:54656729 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B37,C73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810744.1PF01182
Glucosamine_iso 18-249 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810744.1 |
Pfam | PF01182 |
Glucosamine_iso | Domain | 18 | 249 | 6.6e-75 | 252.6 | Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。