Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004088`

染色体: Chr05 坐标: 54731439-54737272 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004088`
名称	SmilChr05G004088
描述	pentatricopeptide repeat-containing protein At1g26460, mitochondrial
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	54731439 - 54737272 / `+`

ID 对照

NCBI Gene ID	`LOC131025149`
GeneID	`131025149`
locus_tag	`-`
NCBI Name	`LOC131025149`
原始查询	`LOC131025149`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g26460, mitochondrial
产物	pentatricopeptide repeat-containing protein At1g26460%2C mitochondrial
Arabidopsis	`AT1G26460` (AT1G26460) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839187] identity=57.7; qcov=0.995; evalue=0; confidence=high
Rice	`Os07g0599000` (OJ1634_B10.107) - identity=57.2; qcov=0.918; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3)
InterPro	-
eggNOG	-
NR	GeneID:131025149

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057810756.1`
2	Mitochondrion membrane	线粒体膜	0.20000	`XP_057810756.1`
3	Nucleus	细胞核	0.00000	`XP_057810756.1`
4	Chromosome	染色体	0.00000	`XP_057810756.1`
5	Centromere	着丝粒	0.00000	`XP_057810756.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:54731713`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C32
`Chr5:54731713`	`GC`	`G`	1bp_deletion	CDS_variant	1	C32
`Chr5:54731795`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B3,C44,C74
`Chr5:54731796`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B3,C44,C74
`Chr5:54731816`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B3,C44,C74
`Chr5:54731821`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B3,C44,C74
`Chr5:54731828`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B101,B102,B30,B35
`Chr5:54731829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B101,B102,B30,B35
`Chr5:54731832`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B3,C44,C74
`Chr5:54731861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B3,C13,C74
`Chr5:54731882`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr5:54731887`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B101,B23,B30,B59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810756.1

613 aa

306

613

PPR_3

PPR

PPR_1

PPR_3

PPR_2

PPR

PPR_3

PPR

PF13812 PPR_3 137-185 aa PF01535 PPR 177-203 aa PF12854 PPR_1 487-516 aa PF13812 PPR_3 487-535 aa PF13041 PPR_2 490-536 aa PF01535 PPR 494-522 aa PF13812 PPR_3 514-560 aa PF01535 PPR 529-557 aa

XP_057810757.1

613 aa

306

613

PPR_3

PPR

PPR_1

PPR_3

PPR_2

PPR

PPR_3

PPR

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810756.1`	Pfam	`PF13812`	PPR_3	Repeat	137	185	2.8e-16	60.1	Pentatricopeptide repeat domain
`XP_057810756.1`	Pfam	`PF01535`	PPR	Repeat	177	203	2.3e-14	53.2	PPR repeat
`XP_057810756.1`	Pfam	`PF12854`	PPR_1	Repeat	487	516	2.1e-13	50.5	PPR repeat
`XP_057810756.1`	Pfam	`PF13812`	PPR_3	Repeat	487	535	2.8e-16	60.1	Pentatricopeptide repeat domain
`XP_057810756.1`	Pfam	`PF13041`	PPR_2	Repeat	490	536	3e-22	79.2	PPR repeat family
`XP_057810756.1`	Pfam	`PF01535`	PPR	Repeat	494	522	2.3e-14	53.2	PPR repeat
`XP_057810756.1`	Pfam	`PF13812`	PPR_3	Repeat	514	560	2.8e-16	60.1	Pentatricopeptide repeat domain
`XP_057810756.1`	Pfam	`PF01535`	PPR	Repeat	529	557	2.3e-14	53.2	PPR repeat
`XP_057810757.1`	Pfam	`PF13812`	PPR_3	Repeat	137	185	2.8e-16	60.1	Pentatricopeptide repeat domain
`XP_057810757.1`	Pfam	`PF01535`	PPR	Repeat	177	203	2.3e-14	53.2	PPR repeat
`XP_057810757.1`	Pfam	`PF12854`	PPR_1	Repeat	487	516	2.1e-13	50.5	PPR repeat
`XP_057810757.1`	Pfam	`PF13812`	PPR_3	Repeat	487	535	2.8e-16	60.1	Pentatricopeptide repeat domain
`XP_057810757.1`	Pfam	`PF13041`	PPR_2	Repeat	490	536	3e-22	79.2	PPR repeat family
`XP_057810757.1`	Pfam	`PF01535`	PPR	Repeat	494	522	2.3e-14	53.2	PPR repeat
`XP_057810757.1`	Pfam	`PF13812`	PPR_3	Repeat	514	560	2.8e-16	60.1	Pentatricopeptide repeat domain
`XP_057810757.1`	Pfam	`PF01535`	PPR	Repeat	529	557	2.3e-14	53.2	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009102094.1
ATCGTCAAATCCGTCGTCAATTTCAATTGGAAATCCATTGCAAAAACCCTAAAACCACCACTGGAAAACTCAACTCTTTTTGTATTTTTCTGCGCTCTCAAATTGTTTAAAAAAAACGAAAATTCCAAATTCCATGAAATTATAGATACAATTTCCATACATATACGTACAGATTCTGTATCTATACGGCATGGCGCCGATCGGGTTTCTGGCGAAGTCGCGGCCTTACATCCAGCGGCAGAACCTCAAATTCATCTCCA...

XM_057954774.1
CCACTTATTAAATTCCTAAATTGACCCTTCTTCAAGATCCATCGTCAAATCCGTCGTCAATTTCAATTGGAAATCCATTGCAAAAACCCTAAAACCACCACTGGAAAACTCAACTCTTTTTGTATTTTTCTGCGCTCTCAAATTGTTTAAAAAAAACGAAAATTCCAAATTCCATGAAATTATAGATACAATTTCCATACATATACGTACAGATTCTGTATCTATACGGCATGGCGCCGATCGGGTTTCTGGCGAAGTCG...

CDS

2 records

下载 CDS FASTA

LOC131025149
ATGGCGCCGATCGGGTTTCTGGCGAAGTCGCGGCCTTACATCCAGCGGCAGAACCTCAAATTCATCTCCACATTTGTTCACCTCCAAGCGGAGCCGCAGCTGGCGGAGCCGCCGGCGTCGATTCCGCCGCCGCTCCCGCCGAACCCCGCCTCCGGCAGTCCGCGCTACAGTGAGAACTGGCGGAATCCGTCCGCCGCTCTGGCGGGAGACGGCGCGCTCGTCCCCGTCGGATTAGGGTTTTTGCAGCAGAATCAGGCATC...

Protein

2 records

下载 Protein FASTA

XP_057810756.1
MAPIGFLAKSRPYIQRQNLKFISTFVHLQAEPQLAEPPASIPPPLPPNPASGSPRYSENWRNPSAALAGDGALVPVGLGFLQQNQASRMQVFAQSLDAESLINQFADWMTTQRWDDMKQLFESWIRSLDRSGKPNTPDVNLYNHYLRANVMSGASTEELLGVLAQMEDYGIAPNSASFNLVLKAMQRSGDMLAAEKLIERMLETGKIHKESLPDNESFDLVIEMLLSKNHIDSALKYVDLTLKSGYMLSMKAFMNCVQRC...

XP_057810757.1
MAPIGFLAKSRPYIQRQNLKFISTFVHLQAEPQLAEPPASIPPPLPPNPASGSPRYSENWRNPSAALAGDGALVPVGLGFLQQNQASRMQVFAQSLDAESLINQFADWMTTQRWDDMKQLFESWIRSLDRSGKPNTPDVNLYNHYLRANVMSGASTEELLGVLAQMEDYGIAPNSASFNLVLKAMQRSGDMLAAEKLIERMLETGKIHKESLPDNESFDLVIEMLLSKNHIDSALKYVDLTLKSGYMLSMKAFMNCVQRC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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