Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004096`

染色体: Chr05 坐标: 54818597-54821264 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004096`
名称	SmilChr05G004096
描述	heparanase-like protein 2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	54818597 - 54821264 / `+`

ID 对照

NCBI Gene ID	`LOC131025157`
GeneID	`131025157`
locus_tag	`-`
NCBI Name	`LOC131025157`
原始查询	`LOC131025157`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heparanase-like protein 2
产物	heparanase-like protein 2
Arabidopsis	`AT5G61250` (GUS1) glucuronidase 1 [Source:NCBI gene (formerly Entrezgene);Acc:836246] identity=55.1; qcov=1; evalue=2.37e-171; confidence=high
Rice	`Os12g0578400` - identity=55.6; qcov=0.974; evalue=4.79e-171; confidence=high
GO	GO:0004566 (beta-glucuronidase activity); GO:0009505 (plant-type cell wall); GO:0016020 (membrane)
KEGG	smil00531 (Glycosaminoglycan degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF03662 (Glyco_hydro_79n)
InterPro	-
eggNOG	-
NR	GeneID:131025157

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell wall	细胞壁	0.80000	`XP_057810769.1`
2	Vacuole	液泡	0.40000	`XP_057810769.1`
3	Nucleus	细胞核	0.00000	`XP_057810769.1`
4	Chromosome	染色体	0.00000	`XP_057810769.1`
5	Centromere	着丝粒	0.00000	`XP_057810769.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:54818784`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C77
`Chr5:54818799`	`A`	`AT`	1bp_insertion	frameshift_variant	11	A25,B24,B26,B52,B61,B74,B77,C15,C25,D4,D6
`Chr5:54818810`	`G`	`GAT`	2bp_insertion	stop_gained,frameshift_variant	14	A23,A25,B16,B24,B26,B52,B61,B74,B77,C15,C25,C42,D4,D6
`Chr5:54818878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,B45,B63
`Chr5:54818897`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr5:54819255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,B45,B63
`Chr5:54819285`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,B9
`Chr5:54819414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr5:54819662`	`TA`	`T`	1bp_deletion	frameshift_variant	1	A19
`Chr5:54819662`	`TA`	`T`	1bp_deletion	CDS_variant	1	A19
`Chr5:54819822`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C79
`Chr5:54819822`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810769.1

521 aa

260

521

Glyco_hydro_79n

PF03662 Glyco_hydro_79n 25-345 aa

XP_057810770.1

419 aa

210

419

Glyco_hydro_79n

PF03662 Glyco_hydro_79n 25-345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810769.1`	Pfam	`PF03662`	Glyco_hydro_79n	Domain	25	345	3.5e-151	503.4	Glycosyl hydrolase family 79, N-terminal domain
`XP_057810770.1`	Pfam	`PF03662`	Glyco_hydro_79n	Domain	25	345	1.9e-151	504.3	Glycosyl hydrolase family 79, N-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954787.1
AATTTAAAGATAAGAATGATGTAACAAAAATATTTGCCCACATGCAAGTTCCTTTTTGGACTAAAACTCTGCAATAAAAGTTTTTGTGTGGGAAAATTTTATACAGCACACTTTATTTATTTATCCACAAAGATCTAATGCTTGATAGCTTTTTTTAGCATGAGATGGGATCAAATGTTGCCATAATCTGTTGTATCATAACATTATTGTTTTGCTTGTGTTGTGATGCTGAAGAAGTGAAGCTGAGAGTGAAAGCATCA...

XM_057954786.1
TTAAAGATAAGAATGATGTAACAAAAATATTTGCCCACATGCAAGTTCCTTTTTGGACTAAAACTCTGCAATAAAAGTTTTTGTGTGGGAAAATTTTATACAGCACACTTTATTTATTTATCCACAAAGATCTAATGCTTGATAGCTTTTTTTAGCATGAGATGGGATCAAATGTTGCCATAATCTGTTGTATCATAACATTATTGTTTTGCTTGTGTTGTGATGCTGAAGAAGTGAAGCTGAGAGTGAAAGCATCAAAA...

CDS

2 records

下载 CDS FASTA

LOC131025157
ATGGGATCAAATGTTGCCATAATCTGTTGTATCATAACATTATTGTTTTGCTTGTGTTGTGATGCTGAAGAAGTGAAGCTGAGAGTGAAAGCATCAAAAGCTATAGCAAAAACTGATGAAGATTTCATCTGTGCTACTCTTGATTGGTGGCCTGAGACCAAATGCAACTACAATCAGTGCCCTTGGGGAAAATCAGGCATTCTCAATCTGGATTTGAACAACAAGATTCTTGCAAATGCCATAAAAGCATTTAGGCCTCT...

Protein

2 records

下载 Protein FASTA

XP_057810769.1
MGSNVAIICCIITLLFCLCCDAEEVKLRVKASKAIAKTDEDFICATLDWWPETKCNYNQCPWGKSGILNLDLNNKILANAIKAFRPLRIRIGGSLQDQVVYDVGTFVRKCPHFKRLDDGLFGFSKGCLPMERWDQINKFFDEMGARMTFGLNALVGRRKGGRGGDDGLMVGEWNPRNAYDLINYTASKGYKIDSYELGNELCGSGVAARVEAWQYARDIVALKKLVAEFYPNPATRPKVLGPAGFYDKEWFDTFLDKSGP...

XP_057810770.1
MGSNVAIICCIITLLFCLCCDAEEVKLRVKASKAIAKTDEDFICATLDWWPETKCNYNQCPWGKSGILNLDLNNKILANAIKAFRPLRIRIGGSLQDQVVYDVGTFVRKCPHFKRLDDGLFGFSKGCLPMERWDQINKFFDEMGARMTFGLNALVGRRKGGRGGDDGLMVGEWNPRNAYDLINYTASKGYKIDSYELGNELCGSGVAARVEAWQYARDIVALKKLVAEFYPNPATRPKVLGPAGFYDKEWFDTFLDKSGP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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