Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004101`

染色体: Chr05 坐标: 54858176-54863436 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004101`
名称	SmilChr05G004101
描述	uncharacterized SmilChr05G004101
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	54858176 - 54863436 / `-`

ID 对照

NCBI Gene ID	`LOC131025162`
GeneID	`131025162`
locus_tag	`-`
NCBI Name	`LOC131025162`
原始查询	`LOC131025162`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	T-box transcription factor, putative (DUF863) [Source:NCBI gene (formerly Entrezgene);Acc:837954]; symbol=AT1G13940; hit=AT1G13940; species=arabidopsis; confidence=low
产物	T-box transcription factor, putative (DUF863) [Source:NCBI gene (formerly Entrezgene);Acc:837954]; symbol=AT1G13940; hit=AT1G13940; species=arabidopsis; confidence=low
Arabidopsis	`AT1G13940` (AT1G13940) T-box transcription factor, putative (DUF863) [Source:NCBI gene (formerly Entrezgene);Acc:837954] identity=33.1; qcov=1.08; evalue=5.49e-110; confidence=low
Rice	`Os12g0577800` - identity=36.1; qcov=0.219; evalue=2.44e-19; confidence=weak
GO	-
KEGG	-
Pfam	PF05904 (DUF863); PF27565 (ELF3_helical)
InterPro	-
eggNOG	-
NR	GeneID:131025162

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810775.1`
2	Chromosome	染色体	0.00000	`XP_057810775.1`
3	Centromere	着丝粒	0.00000	`XP_057810775.1`
4	Chromatin	染色质	0.00000	`XP_057810775.1`
5	Telomere	端粒	0.00000	`XP_057810775.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:54858507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,B37
`Chr5:54858514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr5:54858574`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr5:54858937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B99,C44,C48,C87
`Chr5:54859043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr5:54859069`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B73,B76
`Chr5:54859084`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,B44
`Chr5:54859138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B139,B5,C21,C3
`Chr5:54859174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:54859228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B140,B93,C82,D1,D7
`Chr5:54859524`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,D6
`Chr5:54859533`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810775.1

1036 aa

518

1036

ELF3_helical

DUF863

PF27565 ELF3_helical 63-91 aa PF05904 DUF863 138-507 aa PF05904 DUF863 514-1026 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810775.1`	Pfam	`PF27565`	ELF3_helical	Domain	63	91	1.5e-13	51.0	ELF3 helical domain
`XP_057810775.1`	Pfam	`PF05904`	DUF863	Family	138	507	1.4e-236	788.9	Plant protein of unknown function (DUF863)
`XP_057810775.1`	Pfam	`PF05904`	DUF863	Family	514	1026	1.4e-236	788.9	Plant protein of unknown function (DUF863)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954792.1
ACTGTTCTTAGAAGGTCGTTTGTTTTGTGAAGATTTCTTATCTGGGATCTCTCTCTTTCTCTCTCTACAAAATCAATATTAAAATATTAATTAGAAATTAAATAAGTATAATATTTAAATATTCACAGTTGCAAGAATTCTCTCTTTTTTTATTTTATTTCATTTCTTCTCATTCTCTCTCTCCCTTGCTAGCTTTTTTTTGTTTTCCCTCTCCGAGAGAGAGAGAGGCCCAGCAGATCGAAATCTCCCAATATTTAGTT...

CDS

1 records

下载 CDS FASTA

LOC131025162
ATGGGAACGGAGATGCACTGCAAGAGCTACTTCCCAGGATTTTACATGATGAGGGACCTTAATGATGATTCTAGCAATAGTAGCTGGCCCTTATATTACGGGGATAAGATGGTGGCAAATGGGCAGTATTACAACGGATTCTTGCAGAGGACTCTAGAAAATGGTTACTCGGGGCATGAGAAAGACACCTTGAAACAGAAAATGCTTGAACACGAGGCAGTATTTAAGAATCAGGTTTTGGAACTCCATCGTCTTTATAG...

Protein

1 records

下载 Protein FASTA

XP_057810775.1
MGTEMHCKSYFPGFYMMRDLNDDSSNSSWPLYYGDKMVANGQYYNGFLQRTLENGYSGHEKDTLKQKMLEHEAVFKNQVLELHRLYRIQRDMMEEFKRNGDRASVEPASSSSLQGPQVPSEEARKWHMAGFPLSNSSYGRTSVAAAENFSSPTTCTKGNSTQPGRLSFPNGCTTTNSETLDSRPLKVRKKLFDLQLPADEYVDPEEEENLQVYKKSGVSSYSRNGDPNNGPESVMKLFLGSHAGGKTDLPVDASASAVCL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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