当前解析结果
SmilChr05G004108| 统一新 Gene ID | SmilChr05G004108 |
|---|---|
| 名称 | SmilChr05G004108 |
| 描述 | uncharacterized SmilChr05G004108 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54931175 - 54933983 / + |
| NCBI Gene ID | LOC131025169 |
|---|---|
| GeneID | 131025169 |
| locus_tag | - |
| NCBI Name | LOC131025169 |
| 原始查询 | LOC131025169 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P0453E05.102; symbol=P0453E05.102; hit=Os07g0595800; species=rice; confidence=high |
| 产物 | P0453E05.102; symbol=P0453E05.102; hit=Os07g0595800; species=rice; confidence=high |
| Arabidopsis | AT1G26660 (AT1G26660)Prefoldin chaperone subunit family protein [Source:NCBI gene (formerly Entrezgene);Acc:839206] identity=52.1; qcov=0.979; evalue=2.52e-49; confidence=medium |
| Rice | Os07g0595800 (P0453E05.102)- identity=60.7; qcov=0.931; evalue=2.54e-60; confidence=high |
| GO | GO:0000785 (chromatin); GO:0003712 (transcription coregulator activity); GO:0016592 (mediator complex); GO:0045944 (positive regulation of transcription by RNA polymerase II) |
| KEGG | - |
| Pfam | PF02996 (Prefoldin) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025169 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057810785.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057810785.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057810785.1 |
| 4 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057810787.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057810785.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54931690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:54932233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr5:54932250 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B139,B5,C21,C3,C51 |
Chr5:54932281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr5:54932725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr5:54933522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057810785.1PF02996
Prefoldin 42-149 aa
XP_057810787.1PF02996
Prefoldin 29-136 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810785.1 |
Pfam | PF02996 |
Prefoldin | Coiled-coil | 42 | 149 | 2.4e-18 | 66.9 | Prefoldin subunit |
XP_057810787.1 |
Pfam | PF02996 |
Prefoldin | Coiled-coil | 29 | 136 | 1.9e-18 | 67.3 | Prefoldin subunit |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。