当前解析结果
SmilChr05G004112| 统一新 Gene ID | SmilChr05G004112 |
|---|---|
| 名称 | SmilChr05G004112 |
| 描述 | protein argonaute 7 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54965197 - 54969399 / - |
| NCBI Gene ID | LOC131025172 |
|---|---|
| GeneID | 131025172 |
| locus_tag | - |
| NCBI Name | LOC131025172 |
| 原始查询 | LOC131025172 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein argonaute 7 |
| 产物 | protein argonaute 7 |
| Arabidopsis | AT1G69440 (AGO7)Argonaute family protein [Source:NCBI gene (formerly Entrezgene);Acc:843276] identity=66.5; qcov=0.86; evalue=0; confidence=high |
| Rice | Os03g0449200 (shl4)- identity=63.2; qcov=0.859; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0035194 (regulatory ncRNA-mediated post-transcriptional gene silencing) |
| KEGG | - |
| Pfam | PF02170 (PAZ); PF02171 (Piwi); PF08699 (ArgoL1); PF16486 (ArgoN) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025172 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057810794.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057810794.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.80000 | XP_057810794.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.60000 | XP_057810794.1 |
| 5 | Cytosol | 细胞质基质 | 0.60000 | XP_057810794.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54965501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B18,B27,B58,B64 |
Chr5:54965544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B18,B58,B64 |
Chr5:54965571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B24,B70 |
Chr5:54965575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B139,C4 |
Chr5:54965650 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C41 |
Chr5:54965650 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C41 |
Chr5:54965848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B28 |
Chr5:54966100 |
A |
AAG |
2bp_insertion | frameshift_variant | 1 | B55 |
Chr5:54966100 |
A |
AAG |
2bp_insertion | CDS_variant | 1 | B55 |
Chr5:54966251 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr5:54966314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B57,B71,C2 |
Chr5:54966726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,C45,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810794.1PF16486
ArgoN 160-307 aa
PF08699
ArgoL1 318-366 aa
PF02170
PAZ 380-501 aa
PF02171
Piwi 665-967 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810794.1 |
Pfam | PF16486 |
ArgoN | Domain | 160 | 307 | 2.1e-31 | 110.0 | N-terminal domain of argonaute |
XP_057810794.1 |
Pfam | PF08699 |
ArgoL1 | Domain | 318 | 366 | 1.4e-17 | 63.8 | Argonaute linker 1 domain |
XP_057810794.1 |
Pfam | PF02170 |
PAZ | Domain | 380 | 501 | 3.4e-27 | 95.6 | PAZ domain |
XP_057810794.1 |
Pfam | PF02171 |
Piwi | Domain | 665 | 967 | 2.5e-95 | 320.0 | Piwi domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。