当前解析结果
SmilChr05G004125| 统一新 Gene ID | SmilChr05G004125 |
|---|---|
| 名称 | SmilChr05G004125 |
| 描述 | phenylacetaldehyde reductase-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 55155072 - 55160150 / - |
| NCBI Gene ID | LOC131025185 |
|---|---|
| GeneID | 131025185 |
| locus_tag | - |
| NCBI Name | LOC131025185 |
| 原始查询 | LOC131025185 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phenylacetaldehyde reductase-like |
| 产物 | phenylacetaldehyde reductase-like |
| Arabidopsis | AT5G19440 (AT5G19440)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832064] identity=58.6; qcov=1.02; evalue=4.58e-135; confidence=high |
| Rice | Os01g0528800 (CADL)- identity=53.2; qcov=1.01; evalue=8.4e-123; confidence=high |
| GO | GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) |
| KEGG | - |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025185 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057810810.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057810810.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057810810.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810810.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810810.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:55155304 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B18,B26,B52,B77 |
Chr5:55155353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr5:55155375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B125,B132,C70,D11 |
Chr5:55156292 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,B73,C20 |
Chr5:55156318 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | C19,C5 |
Chr5:55156318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C19,C5 |
Chr5:55156343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:55156396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B132,B55,C85 |
Chr5:55156437 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:55156441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B112,B16 |
Chr5:55156787 |
AGG |
A |
2bp_deletion | frameshift_variant | 1 | A9 |
Chr5:55156787 |
AGG |
A |
2bp_deletion | CDS_variant | 1 | A9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810810.1PF05368
NmrA 7-106 aa
PF01370
Epimerase 10-245 aa
PF16363
GDP_Man_Dehyd 12-199 aa
PF07993
NAD_binding_4 12-205 aa
PF01073
3Beta_HSD 12-239 aa
PF13460
NAD_binding_10 14-134 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810810.1 |
Pfam | PF05368 |
NmrA | Family | 7 | 106 | 9.7e-10 | 39.2 | NmrA-like family |
XP_057810810.1 |
Pfam | PF01370 |
Epimerase | Family | 10 | 245 | 2.2e-25 | 90.2 | NAD dependent epimerase/dehydratase family |
XP_057810810.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 12 | 199 | 2.2e-11 | 44.5 | GDP-mannose 4,6 dehydratase |
XP_057810810.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 12 | 205 | 2.4e-15 | 57.1 | Male sterility protein |
XP_057810810.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 12 | 239 | 7.2e-18 | 65.3 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057810810.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 14 | 134 | 4.2e-11 | 43.8 | NAD(P)H-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。