Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004126`

染色体: Chr05 坐标: 55173329-55178235 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004126`
名称	SmilChr05G004126
描述	phenylacetaldehyde reductase-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	55173329 - 55178235 / `-`

ID 对照

NCBI Gene ID	`LOC131025186`
GeneID	`131025186`
locus_tag	`-`
NCBI Name	`LOC131025186`
原始查询	`LOC131025186`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phenylacetaldehyde reductase-like
产物	phenylacetaldehyde reductase-like
Arabidopsis	`AT1G09480` (AT1G09480) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837471] identity=56.9; qcov=0.994; evalue=3.05e-122; confidence=high
Rice	`Os01g0528800` (CADL) - identity=50.6; qcov=1.02; evalue=3.09e-112; confidence=high
GO	GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131025186

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057810811.1`
2	Cytoplasm	细胞质	0.80000	`XP_057810811.1`
3	Nucleus	细胞核	0.00000	`XP_057810811.1`
4	Chromosome	染色体	0.00000	`XP_057810811.1`
5	Centromere	着丝粒	0.00000	`XP_057810811.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:55173544`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:55173630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B25,B58,B68,B91
`Chr5:55174532`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A23,B128,B30,B63,C32
`Chr5:55174532`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B128,B30,B63,C32
`Chr5:55174540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B128,B30,B63,C32
`Chr5:55174885`	`ACT`	`A`	2bp_deletion	frameshift_variant	11	B100,B102,B28,B68,B81,C20,C21,C34,C37,C85,C9
`Chr5:55174889`	`A`	`ACC`	2bp_insertion	frameshift_variant	12	B100,B102,B121,B28,B68,B81,C20,C21,C34,C37,C85,C9
`Chr5:55175422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:55175451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B111,B121,B60,B74,C24
`Chr5:55175453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr5:55175456`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:55175483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810811.1

326 aa

163

326

NmrA

Epimerase

GDP_Man_Dehyd

NAD_binding_4

3Beta_HSD

NAD_binding_10

PF05368 NmrA 7-106 aa PF01370 Epimerase 10-243 aa PF16363 GDP_Man_Dehyd 12-130 aa PF07993 NAD_binding_4 12-203 aa PF01073 3Beta_HSD 12-239 aa PF13460 NAD_binding_10 14-133 aa

XP_057810812.1

322 aa

161

322

NmrA

Epimerase

GDP_Man_Dehyd

NAD_binding_4

3Beta_HSD

NAD_binding_10

PF05368 NmrA 7-106 aa PF01370 Epimerase 10-202 aa PF16363 GDP_Man_Dehyd 12-130 aa PF07993 NAD_binding_4 12-203 aa PF01073 3Beta_HSD 12-213 aa PF13460 NAD_binding_10 14-133 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810811.1`	Pfam	`PF05368`	NmrA	Family	7	106	9e-09	36.1	NmrA-like family
`XP_057810811.1`	Pfam	`PF01370`	Epimerase	Family	10	243	3.3e-22	79.8	NAD dependent epimerase/dehydratase family
`XP_057810811.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	12	130	1.3e-10	42.0	GDP-mannose 4,6 dehydratase
`XP_057810811.1`	Pfam	`PF07993`	NAD_binding_4	Family	12	203	4e-15	56.4	Male sterility protein
`XP_057810811.1`	Pfam	`PF01073`	3Beta_HSD	Family	12	239	1.7e-17	64.1	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057810811.1`	Pfam	`PF13460`	NAD_binding_10	Domain	14	133	4.1e-10	40.5	NAD(P)H-binding
`XP_057810812.1`	Pfam	`PF05368`	NmrA	Family	7	106	6.3e-09	36.6	NmrA-like family
`XP_057810812.1`	Pfam	`PF01370`	Epimerase	Family	10	202	2.9e-21	76.7	NAD dependent epimerase/dehydratase family
`XP_057810812.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	12	130	1.7e-10	41.6	GDP-mannose 4,6 dehydratase
`XP_057810812.1`	Pfam	`PF07993`	NAD_binding_4	Family	12	203	4e-15	56.4	Male sterility protein
`XP_057810812.1`	Pfam	`PF01073`	3Beta_HSD	Family	12	213	9.3e-17	61.7	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057810812.1`	Pfam	`PF13460`	NAD_binding_10	Domain	14	133	4e-10	40.6	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954828.1
AGCACAGTGAGAGAGAGAGAGAGAAGATGAGTAGAGAAGGAGGAAAAGAAGTGGTGTGCGTGACAGGAGCATCTGGATACGTGGCATCATGGCTTGTTAAACTTCTGCTCCACCGAGGTTACACTGTTAAAGCCACCGTTCGCAACCTCAGTGATCCGAGTAAAACTGAGCATTTGAAGGCATTGGAAGGAGCCGAGGAGAGGTTAGAGTTATTCGAAGCCGATTTACTCCAGGAAGGTTCATTTGATTCTATAATTCAT...

XM_057954829.1
TGAGAGAGAGAGAGAGAAGATGAGTAGAGAAGGAGGAAAAGAAGTGGTGTGCGTGACAGGAGCATCTGGATACGTGGCATCATGGCTTGTTAAACTTCTGCTCCACCGAGGTTACACTGTTAAAGCCACCGTTCGCAACCTCAGTGATCCGAGTAAAACTGAGCATTTGAAGGCATTGGAAGGAGCCGAGGAGAGGTTAGAGTTATTCGAAGCCGATTTACTCCAGGAAGGTTCATTTGATTCTATAATTCATGACTGCG...

CDS

2 records

下载 CDS FASTA

LOC131025186
ATGAGTAGAGAAGGAGGAAAAGAAGTGGTGTGCGTGACAGGAGCATCTGGATACGTGGCATCATGGCTTGTTAAACTTCTGCTCCACCGAGGTTACACTGTTAAAGCCACCGTTCGCAACCTCAGTGATCCGAGTAAAACTGAGCATTTGAAGGCATTGGAAGGAGCCGAGGAGAGGTTAGAGTTATTCGAAGCCGATTTACTCCAGGAAGGTTCATTTGATTCTATAATTCATGACTGCGTCGGCGTCTTTCATACAGC...

Protein

2 records

下载 Protein FASTA

XP_057810811.1
MSREGGKEVVCVTGASGYVASWLVKLLLHRGYTVKATVRNLSDPSKTEHLKALEGAEERLELFEADLLQEGSFDSIIHDCVGVFHTASPVTLVTTNPQADLIDPAVKGTLNVLKSCCEAKSVRRVVLTSSIVAVAYNRKAIGADVVVDETCHSDLALCQENKEWYNLSKTLAEQAAWNFANENGIDLVVMNPGLVLGPILQPTLNFTSQLVVDIIKGKLAVPFYQCVDVRDVAHAHIMGFEKSSASGRYILAGEPLTHLQ...

XP_057810812.1
MSREGGKEVVCVTGASGYVASWLVKLLLHRGYTVKATVRNLSDPSKTEHLKALEGAEERLELFEADLLQEGSFDSIIHDCVGVFHTASPVTLVTTNPQADLIDPAVKGTLNVLKSCCEAKSVRRVVLTSSIVAVAYNRKAIGADVVVDETCHSDLALCQENKEWYNLSKTLAEQAAWNFANENGIDLVVMNPGLVLGPILQPTLNFTSQLVVDIIKVPFYQCVDVRDVAHAHIMGFEKSSASGRYILAGEPLTHLQLMQL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器