Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G004150

染色体: Chr05 坐标: 55415066-55419019 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G004150
名称SmilChr05G004150
描述uncharacterized SmilChr05G004150
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向55415066 - 55419019 / +

ID 对照

NCBI Gene IDLOC131025204
GeneID131025204
locus_tag-
NCBI NameLOC131025204
原始查询LOC131025204

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814825]; symbol=AT2G02960; hit=AT2G02960; species=arabidopsis; confidence=high
产物RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814825]; symbol=AT2G02960; hit=AT2G02960; species=arabidopsis; confidence=high
ArabidopsisAT2G02960 (AT2G02960)
RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814825]
identity=63.9; qcov=0.824; evalue=4.12e-91; confidence=high
RiceOs11g0600700
-
identity=59.9; qcov=0.936; evalue=1.03e-89; confidence=high
GOGO:0004842 (ubiquitin-protein transferase activity); GO:0008270 (zinc ion binding); GO:0016020 (membrane); GO:0016567 (protein ubiquitination)
KEGG-
PfamPF12428 (DUF3675); PF12906 (RINGv)
InterPro-
eggNOG-
NRGeneID:131025204

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.60000 XP_057810839.1
2 Endoplasmic reticulum 内质网 0.40000 XP_057810839.1
3 Golgi apparatus 高尔基体 0.20000 XP_057810834.1
4 Vacuole 液泡 0.20000 XP_057810839.1
5 Vacuole membrane 液泡膜 0.20000 XP_057810839.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:55415911 G A EMS_canonical_SNV CDS_variant 1 A9
Chr5:55415980 G A EMS_canonical_SNV CDS_variant 3 B133,B78,C2
Chr5:55417565 G A EMS_canonical_SNV CDS_variant 2 B50,C76
Chr5:55418063 G A EMS_canonical_SNV CDS_variant 3 A2,B24,B70
Chr5:55418236 G A EMS_canonical_SNV CDS_variant 3 B124,B129,C59
Chr5:55418275 G A EMS_canonical_SNV CDS_variant 4 B123,B81,B85,C28
Chr5:55418332 G A EMS_canonical_SNV CDS_variant 1 A9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810834.1
297 aa
N
1
148
297
RINGv
DUF3675
C
PF12906 RINGv 74-119 aa PF12428 DUF3675 126-245 aa
XP_057810835.1
297 aa
N
1
148
297
RINGv
DUF3675
C
PF12906 RINGv 74-119 aa PF12428 DUF3675 126-245 aa
XP_057810836.1
297 aa
N
1
148
297
RINGv
DUF3675
C
PF12906 RINGv 74-119 aa PF12428 DUF3675 126-245 aa
XP_057810837.1
297 aa
N
1
148
297
RINGv
DUF3675
C
PF12906 RINGv 74-119 aa PF12428 DUF3675 126-245 aa
XP_057810838.1
297 aa
N
1
148
297
RINGv
DUF3675
C
PF12906 RINGv 74-119 aa PF12428 DUF3675 126-245 aa
XP_057810839.1
296 aa
N
1
148
296
RINGv
DUF3675
C
PF12906 RINGv 74-119 aa PF12428 DUF3675 126-245 aa
XP_057810840.1
296 aa
N
1
148
296
RINGv
DUF3675
C
PF12906 RINGv 74-119 aa PF12428 DUF3675 126-245 aa
XP_057810841.1
296 aa
N
1
148
296
RINGv
DUF3675
C
PF12906 RINGv 74-119 aa PF12428 DUF3675 126-245 aa
XP_057810842.1
296 aa
N
1
148
296
RINGv
DUF3675
C
PF12906 RINGv 74-119 aa PF12428 DUF3675 126-245 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810834.1 Pfam PF12906 RINGv Domain 74 119 1.2e-13 51.7 RING-variant domain
XP_057810834.1 Pfam PF12428 DUF3675 Family 126 245 2.7e-40 138.3 Protein of unknown function (DUF3675)
XP_057810835.1 Pfam PF12906 RINGv Domain 74 119 1.2e-13 51.7 RING-variant domain
XP_057810835.1 Pfam PF12428 DUF3675 Family 126 245 2.7e-40 138.3 Protein of unknown function (DUF3675)
XP_057810836.1 Pfam PF12906 RINGv Domain 74 119 1.2e-13 51.7 RING-variant domain
XP_057810836.1 Pfam PF12428 DUF3675 Family 126 245 2.7e-40 138.3 Protein of unknown function (DUF3675)
XP_057810837.1 Pfam PF12906 RINGv Domain 74 119 1.2e-13 51.7 RING-variant domain
XP_057810837.1 Pfam PF12428 DUF3675 Family 126 245 2.7e-40 138.3 Protein of unknown function (DUF3675)
XP_057810838.1 Pfam PF12906 RINGv Domain 74 119 1.2e-13 51.7 RING-variant domain
XP_057810838.1 Pfam PF12428 DUF3675 Family 126 245 2.7e-40 138.3 Protein of unknown function (DUF3675)
XP_057810839.1 Pfam PF12906 RINGv Domain 74 119 1.1e-13 51.7 RING-variant domain
XP_057810839.1 Pfam PF12428 DUF3675 Family 126 245 2.7e-40 138.4 Protein of unknown function (DUF3675)
XP_057810840.1 Pfam PF12906 RINGv Domain 74 119 1.1e-13 51.7 RING-variant domain
XP_057810840.1 Pfam PF12428 DUF3675 Family 126 245 2.7e-40 138.4 Protein of unknown function (DUF3675)
XP_057810841.1 Pfam PF12906 RINGv Domain 74 119 1.1e-13 51.7 RING-variant domain
XP_057810841.1 Pfam PF12428 DUF3675 Family 126 245 2.7e-40 138.4 Protein of unknown function (DUF3675)
XP_057810842.1 Pfam PF12906 RINGv Domain 74 119 1.1e-13 51.7 RING-variant domain
XP_057810842.1 Pfam PF12428 DUF3675 Family 126 245 2.7e-40 138.4 Protein of unknown function (DUF3675)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057954855.1
TTAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAAGACAAGAGGAGAATACGTCGCACATATCGTATTGACCTTGGTAATTTCTCGTGGTTGGGCATCAAATTCGCGATTTCTTTTACACTCCCATTTCCATTTTTCCCTTCTGCTTTCAGGGATACTTTTGGTTGTTGATTGAGGTAGCGGCGTGGTTAGAAAAAAAAAGAATAAAATTTACTAAAAAAGGAAATTGTGAATGGGTGAGCATTTGGTGGTGAATATGGA...
XM_057954852.1
TTAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAAGACAAGAGGAGAATACGTCGCACATATCGTATTGACCTTGGTAATTTCTCGTGGTTGGGCATCAAATTCGCGATTTCTTTTACACTCCCATTTCCATTTTTCCCTTCTGCTTTCAGGGATACTTTTGGTTGTTGATTGAGGTAGCGGCGTGGTTAGAAAAAAAAAGAATAAAATTTACTAAAAAAGGAAATTGTGAATGGGTGAGCATTTGGTGGTGAATATGGA...

CDS

9 records

下载 CDS FASTA
LOC131025204
ATGGGTGAGCATTTGGTGGTGAATATGGACCAGCTGCCGAAGCCTGAGGTGGTTGAGCATAGCCAACCGGTGTCTCACGCCGTTTCATGTGGTTCCGTGGGGAAGAAGTCTGAGTTGGTGGGGACGTCATCGTCATCAGCACCGGAGGATGAGAAGGTGGTGGTGGTGGTGGAAAATGAGGATGCAGACGAGGAGGCGCCGCTGATAGGGATGGGGGAGTGCCGGATTTGTCAGGAGGAGGATTCGATAAACAATTTGGA...
LOC131025204
ATGGGTGAGCATTTGGTGGTGAATATGGACCAGCTGCCGAAGCCTGAGGTGGTTGAGCATAGCCAACCGGTGTCTCACGCCGTTTCATGTGGTTCCGTGGGGAAGAAGTCTGAGTTGGTGGGGACGTCATCGTCATCAGCACCGGAGGATGAGAAGGTGGTGGTGGTGGTGGAAAATGAGGATGCAGACGAGGAGGCGCCGCTGATAGGGATGGGGGAGTGCCGGATTTGTCAGGAGGAGGATTCGATAAACAATTTGGA...

Protein

9 records

下载 Protein FASTA
XP_057810834.1
MGEHLVVNMDQLPKPEVVEHSQPVSHAVSCGSVGKKSELVGTSSSSAPEDEKVVVVVENEDADEEAPLIGMGECRICQEEDSINNLESPCACSGSLKYAHRKCVQYWCNEKGDITCEICHQPYQSGYTAPARPPSDETSIDIGSVWQISGTPLDMHDPRLLAIAEAERQLFEADYDDYNGTSNSGTAFCRSAALILMALLLLRHALSITDDGDGEGDDDASTFFSLFLLRAVGFLLPCYIMIWAISILQRRRQRQEAAAL...
XP_057810835.1
MGEHLVVNMDQLPKPEVVEHSQPVSHAVSCGSVGKKSELVGTSSSSAPEDEKVVVVVENEDADEEAPLIGMGECRICQEEDSINNLESPCACSGSLKYAHRKCVQYWCNEKGDITCEICHQPYQSGYTAPARPPSDETSIDIGSVWQISGTPLDMHDPRLLAIAEAERQLFEADYDDYNGTSNSGTAFCRSAALILMALLLLRHALSITDDGDGEGDDDASTFFSLFLLRAVGFLLPCYIMIWAISILQRRRQRQEAAAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器