Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004155`

染色体: Chr05 坐标: 55479235-55483738 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004155`
名称	SmilChr05G004155
描述	probable methyltransferase PMT2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	55479235 - 55483738 / `+`

ID 对照

NCBI Gene ID	`LOC131025211`
GeneID	`131025211`
locus_tag	`-`
NCBI Name	`LOC131025211`
原始查询	`LOC131025211`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable methyltransferase PMT2
产物	probable methyltransferase PMT2
Arabidopsis	`AT1G26850` (AT1G26850) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839229] identity=77.4; qcov=1; evalue=0; confidence=high
Rice	`Os09g0415700` - identity=71.7; qcov=1; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0005768 (endosome); GO:0005802 (trans-Golgi network); GO:0008168 (methyltransferase activity)
KEGG	-
Pfam	PF03141 (Methyltransf_29); PF08241 (Methyltransf_11)
InterPro	-
eggNOG	-
NR	GeneID:131025211

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057810847.1`
2	Nucleus	细胞核	0.00000	`XP_057810847.1`
3	Chromosome	染色体	0.00000	`XP_057810847.1`
4	Centromere	着丝粒	0.00000	`XP_057810847.1`
5	Chromatin	染色质	0.00000	`XP_057810847.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:55480615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,B57,C1,C55,C61
`Chr5:55480681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,C20
`Chr5:55480813`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr5:55481818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B94,C33,D3
`Chr5:55481983`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B100,C16
`Chr5:55481983`	`AT`	`A`	1bp_deletion	CDS_variant	2	B100,C16
`Chr5:55482179`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,C76
`Chr5:55483247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,B57,C1,C55,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810847.1

612 aa

306

612

Methyltransf_29

Methyltransf_11

PF03141 Methyltransf_29 94-602 aa PF08241 Methyltransf_11 211-305 aa

XP_057810848.1

612 aa

306

612

Methyltransf_29

Methyltransf_11

PF03141 Methyltransf_29 94-602 aa PF08241 Methyltransf_11 211-305 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810847.1`	Pfam	`PF03141`	Methyltransf_29	Family	94	602	2.2e-228	759.7	Putative S-adenosyl-L-methionine-dependent methyltransferase
`XP_057810847.1`	Pfam	`PF08241`	Methyltransf_11	Domain	211	305	3.8e-10	41.0	Methyltransferase domain
`XP_057810848.1`	Pfam	`PF03141`	Methyltransf_29	Family	94	602	2.2e-228	759.7	Putative S-adenosyl-L-methionine-dependent methyltransferase
`XP_057810848.1`	Pfam	`PF08241`	Methyltransf_11	Domain	211	305	3.8e-10	41.0	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954865.1
AACCGAAATCATTTTAGTTACCGCAATTATTGGTGTGATCGAAAAAAACGAAAAAACAAAATTACACGTTTATTTATATTTTATATTGTCATTTTCCTTTTTGAGTTCCAATTTGCAAATACCCAAAATTAATTTCTGTACAACGTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATTTAGGGAGGTGGTGTAGTCCATTTATATATACGAAGAAGAAGACGCGGCCTAATAATCCGATCACGGCGATATAAACCGAAA...

XM_057954864.1
CTATCTTCGAGTAAAGGTTGAATCTTGCTCTGAACGCGATGATTGTTTTTTGCTTTTCTTTTTTTTGAGGATTCATTTAGGATAGGGGGATAAGAGAAGATAATGAAAGAGATAATAAATAAATAAATAATATTTGAGGGACCGTGATGGCGAACAAGTTTCATTCGGGGGATGGTAGGACCAGGAGTTCCGTGTCGATCTTTATAGTAGCTGGTCTATGCTGTTTCTTCTACATACTAGGGGCATGGCAGAGAAGTGGA...

CDS

2 records

下载 CDS FASTA

LOC131025211
ATGGCGAACAAGTTTCATTCGGGGGATGGTAGGACCAGGAGTTCCGTGTCGATCTTTATAGTAGCTGGTCTATGCTGTTTCTTCTACATACTAGGGGCATGGCAGAGAAGTGGATTTGGGAAAGGGGACAGAATAGCGATCCGGATGGCCGAGAGTGGAGCAGATTGCAATATCCTCCCGAATCTCAATTTCGAAACCCATCATGGTGGTGAAGCTGGGGTGATTGATGATTCTGATTCTAAGGTGACAGTGTACAAGCC...

Protein

2 records

下载 Protein FASTA

XP_057810847.1
MANKFHSGDGRTRSSVSIFIVAGLCCFFYILGAWQRSGFGKGDRIAIRMAESGADCNILPNLNFETHHGGEAGVIDDSDSKVTVYKPCPSKYTDYTPCQDQRRAMTFSRDNMFYRERHCPSQEQKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIANGTVRTALDTGCGVASWGAYLWKRNVITMSFAPRDSHQAQVQFALERGVPAVIGVLG...

XP_057810848.1
MANKFHSGDGRTRSSVSIFIVAGLCCFFYILGAWQRSGFGKGDRIAIRMAESGADCNILPNLNFETHHGGEAGVIDDSDSKVTVYKPCPSKYTDYTPCQDQRRAMTFSRDNMFYRERHCPSQEQKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPIANGTVRTALDTGCGVASWGAYLWKRNVITMSFAPRDSHQAQVQFALERGVPAVIGVLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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