当前解析结果
SmilChr05G004175| 统一新 Gene ID | SmilChr05G004175 |
|---|---|
| 名称 | SmilChr05G004175 |
| 描述 | transcription factor MYB124-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 55678428 - 55681348 / + |
| NCBI Gene ID | LOC131025228 |
|---|---|
| GeneID | 131025228 |
| locus_tag | - |
| NCBI Name | LOC131025228 |
| 原始查询 | LOC131025228 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB124-like |
| 产物 | transcription factor MYB124-like |
| Arabidopsis | AT1G14350 (FLP)Duplicated homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837997] identity=53.7; qcov=1.06; evalue=9.7e-140; confidence=high |
| Rice | Os07g0627300 (R2R3-MYB)- identity=46.9; qcov=0.663; evalue=8.15e-73; confidence=high |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025228 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057810876.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057810876.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057810876.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057810876.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057810876.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:55679301 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,B101,B115,B131,C46 |
Chr5:55679302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,B101,B115,B131,C46 |
Chr5:55679648 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,C24,C42,C63 |
Chr5:55679667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr5:55679713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,C24,C42,C63 |
Chr5:55679926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:55680179 |
G |
GC |
1bp_insertion | frameshift_variant | 2 | B73,B78 |
Chr5:55680179 |
G |
GC |
1bp_insertion | CDS_variant | 2 | B73,B78 |
Chr5:55680226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:55680237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B87,D11 |
Chr5:55680301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B122,B27,D8 |
Chr5:55680399 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B112,B16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810876.1PF00249
Myb_DNA-binding 31-75 aa
PF13921
Myb_DNA-bind_6 32-92 aa
PF00249
Myb_DNA-binding 81-124 aa
PF13921
Myb_DNA-bind_6 84-131 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810876.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 31 | 75 | 3.3e-30 | 104.7 | Myb-like DNA-binding domain |
XP_057810876.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 32 | 92 | 6.3e-23 | 81.4 | Myb-like DNA-binding domain |
XP_057810876.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 81 | 124 | 3.3e-30 | 104.7 | Myb-like DNA-binding domain |
XP_057810876.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 84 | 131 | 6.3e-23 | 81.4 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。