当前解析结果
SmilChr05G004188| 统一新 Gene ID | SmilChr05G004188 |
|---|---|
| 名称 | SmilChr05G004188 |
| 描述 | uncharacterized SmilChr05G004188 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 55789551 - 55791698 / - |
| NCBI Gene ID | LOC131025242 |
|---|---|
| GeneID | 131025242 |
| locus_tag | - |
| NCBI Name | LOC131025242 |
| 原始查询 | LOC131025242 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | small multi-drug export protein [Source:NCBI gene (formerly Entrezgene);Acc:814789]; symbol=AT2G02590; hit=AT2G02590; species=arabidopsis; confidence=high |
| 产物 | small multi-drug export protein [Source:NCBI gene (formerly Entrezgene);Acc:814789]; symbol=AT2G02590; hit=AT2G02590; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G02590 (AT2G02590)small multi-drug export protein [Source:NCBI gene (formerly Entrezgene);Acc:814789] identity=64.7; qcov=0.884; evalue=2.58e-105; confidence=high |
| Rice | Os03g0800500 (OSJNBa0052F07.9)- identity=55.7; qcov=0.952; evalue=1.62e-99; confidence=high |
| GO | GO:0009507 (chloroplast) |
| KEGG | - |
| Pfam | PF06695 (Sm_multidrug_ex) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025242 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057810894.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057810894.1 |
| 3 | Chloroplast thylakoid | 类囊体 | 0.60000 | XP_057810894.1 |
| 4 | Chloroplast thylakoid membrane | 类囊体膜 | 0.20000 | XP_057810894.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057810894.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:55789877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B19,B74 |
Chr5:55789924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,C27,C4,C46 |
Chr5:55791174 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr5:55791217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr5:55791223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:55791225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B28 |
Chr5:55791319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,D11 |
Chr5:55791465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,B94 |
Chr5:55791552 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057810894.1PF06695
Sm_multidrug_ex 148-269 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810894.1 |
Pfam | PF06695 |
Sm_multidrug_ex | Family | 148 | 269 | 5.9e-38 | 130.9 | Putative small multi-drug export protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。