Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004192`

染色体: Chr05 坐标: 55801152-55803411 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004192`
名称	SmilChr05G004192
描述	uncharacterized SmilChr05G004192
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	55801152 - 55803411 / `-`

ID 对照

NCBI Gene ID	`LOC131025246`
GeneID	`131025246`
locus_tag	`-`
NCBI Name	`LOC131025246`
原始查询	`LOC131025246`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:842265]; symbol=AT1G59725; hit=AT1G59725; species=arabidopsis; confidence=high
产物	DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:842265]; symbol=AT1G59725; hit=AT1G59725; species=arabidopsis; confidence=high
Arabidopsis	`AT1G59725` (AT1G59725) DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:842265] identity=62.9; qcov=1.07; evalue=1.63e-139; confidence=high
Rice	`Os02g0306900` (OsDjB4) - identity=51.1; qcov=1.13; evalue=5.62e-121; confidence=high
GO	GO:0005829 (cytosol); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051087 (protein-folding chaperone binding)
KEGG	-
Pfam	PF00226 (DnaJ); PF01556 (DnaJ_C)
InterPro	-
eggNOG	-
NR	GeneID:131025246

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057810897.1`
2	Cytoplasm	细胞质	0.40000	`XP_057810897.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057810897.1`
4	Nucleus	细胞核	0.00000	`XP_057810897.1`
5	Chromosome	染色体	0.00000	`XP_057810897.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:55801489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,D3
`Chr5:55801564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:55801732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B17,D1
`Chr5:55801765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr5:55801782`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr5:55802630`	`C`	`CG`	1bp_insertion	frameshift_variant	8	A3,B133,B42,B43,B70,B71,C33,C72
`Chr5:55802634`	`G`	`GCC`	2bp_insertion	frameshift_variant	24	A2,A22,A24,B105,B121,B129,B138,B21,B39,B42,B43,B52,B53,B60,B61,B62,B82,B91,C14,C18,C25,C57,C85,D1
`Chr5:55802721`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr5:55802742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C73,C77
`Chr5:55802901`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810897.1

307 aa

154

307

DnaJ

DnaJ_C

PF00226 DnaJ 4-67 aa PF01556 DnaJ_C 130-287 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810897.1`	Pfam	`PF00226`	DnaJ	Domain	4	67	4.1e-26	91.6	DnaJ domain
`XP_057810897.1`	Pfam	`PF01556`	DnaJ_C	Domain	130	287	2.9e-43	148.3	DnaJ C terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954914.1
ATAAAACAAAAAAAAAATGATTTAAAAAAAGAAAACAGGTTTCTTTTCTGGTTACTTTTGGTAGTACTTTTCGTTGAGATCGAGTTATTCTCGTGAACATTCCCAAACACGCCTTAGGATTTCACGACAATTTTTTTTTTTTAATTATTTTTTTCCTTTTCTTTTTTTCTTTCCTAACTGTAATATCAGAATCTCCAAAAACGCCTGTCATTTTAACCAACCACCTTAAAAATATCGACACTCACCTTCACCTGCCTCTT...

CDS

1 records

下载 CDS FASTA

LOC131025246
ATGGGCGTCGATTACTACAACATACTGAGAGTGTCGAGAAGCGCGACGGAGGAGGATTTGAAGAAATCGTACAAGAGATTGGCGATGAAATGGCACCCAGACAAGAACGCAGTCAACACGAAGGAAGCGGAGGCCAAATTCAAGCAGATTAGCGAGGCCTACGATGTCCTGAGCGATTCGCAGAAGCGGCAGATCTACGATTTGTACGGCGAGGAAGGGCTGAAATCCGGGCTCCACGCGCCGCCCAAGGACAGAGATTC...

Protein

1 records

下载 Protein FASTA

XP_057810897.1
MGVDYYNILRVSRSATEEDLKKSYKRLAMKWHPDKNAVNTKEAEAKFKQISEAYDVLSDSQKRQIYDLYGEEGLKSGLHAPPKDRDSGYGGGAAAGFKFSPRDAEDIFEEFFGGSAAGGGGGLKKAAVMESKLACSLEELYKGSRRKMKISRIVLDGSGKPVTVEEVLSIHIKPGWKKGTKITFPEKGNHEAGAAPGDLIFVVDEKPHQVFKRDGNDLIINQKISLLDALTGKTLKISTLDGRDLTVSVSDIIKPGYEMM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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