Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004201`

染色体: Chr05 坐标: 55869806-55881921 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004201`
名称	SmilChr05G004201
描述	phospholipid-transporting ATPase 3
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	55869806 - 55881921 / `+`

ID 对照

NCBI Gene ID	`LOC131025252`
GeneID	`131025252`
locus_tag	`-`
NCBI Name	`LOC131025252`
原始查询	`LOC131025252`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phospholipid-transporting ATPase 3
产物	phospholipid-transporting ATPase 3
Arabidopsis	`AT1G59820` (ALA3) aminophospholipid ATPase 3 [Source:NCBI gene (formerly Entrezgene);Acc:842275] identity=77.2; qcov=0.985; evalue=0; confidence=high
Rice	`Os10g0412000` - identity=77.5; qcov=0.523; evalue=0; confidence=medium
GO	GO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0016887 (ATP hydrolysis activity); GO:0045332 (phospholipid translocation); GO:0140326 (ATPase-coupled intramembrane lipid carrier activity)
KEGG	smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF13246 (Cation_ATPase); PF16209 (PhoLip_ATPase_N); PF16212 (PhoLip_ATPase_C)
InterPro	-
eggNOG	-
NR	GeneID:131025252

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057810904.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.60000	`XP_057810904.1`
3	Endosome	内体	0.60000	`XP_057810904.1`
4	Endosome membrane	内体膜	0.60000	`XP_057810904.1`
5	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057810904.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:55873620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:55873665`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B81,C14
`Chr5:55874550`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B35,B58,B72,B87,C2
`Chr5:55874575`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr5:55876212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,B29,B57,D10,D8
`Chr5:55878559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A15,B104,C11,C69
`Chr5:55879694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:55880980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B139,C73
`Chr5:55880981`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr5:55881199`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B81,C14
`Chr5:55881416`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B21,B74
`Chr5:55881491`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810904.1

1228 aa

614

1228

PhoLip_ATPase_N

Cation_ATPase

PhoLip_ATPase_C

PF16209 PhoLip_ATPase_N 41-105 aa PF13246 Cation_ATPase 494-692 aa PF16212 PhoLip_ATPase_C 875-1125 aa

XP_057810905.1

1226 aa

613

1226

PhoLip_ATPase_N

Cation_ATPase

PhoLip_ATPase_C

PF16209 PhoLip_ATPase_N 41-105 aa PF13246 Cation_ATPase 492-690 aa PF16212 PhoLip_ATPase_C 873-1123 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810904.1`	Pfam	`PF16209`	PhoLip_ATPase_N	Family	41	105	1.3e-25	89.6	Phospholipid-translocating ATPase N-terminal
`XP_057810904.1`	Pfam	`PF13246`	Cation_ATPase	Family	494	692	3e-22	80.0	P-type ATPase, cytoplasmic domain N
`XP_057810904.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	875	1125	3.4e-86	289.8	Phospholipid-translocating P-type ATPase C-terminal
`XP_057810905.1`	Pfam	`PF16209`	PhoLip_ATPase_N	Family	41	105	1.3e-25	89.6	Phospholipid-translocating ATPase N-terminal
`XP_057810905.1`	Pfam	`PF13246`	Cation_ATPase	Family	492	690	3e-22	80.0	P-type ATPase, cytoplasmic domain N
`XP_057810905.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	873	1123	3.4e-86	289.8	Phospholipid-translocating P-type ATPase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954922.1
TAGCTGCGAAATAGTCGTAGCTGATGTCTGCAAAAGTGGCCGTGAAACATCGGCGACTCCTTCAAAATTCATCTTCTCCAAATCGCAACCGTCTCAACCACAACTGCGCGAGAACGACGCCGCCATTCGTCCACGCGCCGCCTCTCGCGGGTGCACCAAAAGCAGGCGGATTCCACTTCAGTCGTCACTGAGCCAACACGTGGCGGTCAATGACCCAATTTCGACGCGGATTGAAATTGACGTATGAAATCTCGGGTCCT...

XM_057954921.1
AGCTGCGAAATAGTCGTAGCTGATGTCTGCAAAAGTGGCCGTGAAACATCGGCGACTCCTTCAAAATTCATCTTCTCCAAATCGCAACCGTCTCAACCACAACTGCGCGAGAACGACGCCGCCATTCGTCCACGCGCCGCCTCTCGCGGGTGCACCAAAAGCAGGCGGATTCCACTTCAGTCGTCACTGAGCCAACACGTGGCGGTCAATGACCCAATTTCGACGCGGATTGAAATTGACGTATGAAATCTCGGGTCCTG...

CDS

2 records

下载 CDS FASTA

LOC131025252
ATGGCCGGGTGGAGAGGATCTAGAGGCGGAGGCGACGGCGCGCCGTCGGAGGAGCGCATCGCGTCGTCTCAAACTGTCCGTCTGGGGAAAGTTCAGCCGCAGGCGCCGGGTCACAGGACCGTGTTCTGCAATGATCGCGAGGCGAACGCGCTCGCCAAATTCAAGGGTAATTCTGTGTCAACAACAAAGTATGATGTATTTACATTTTTACCAAAGGGGCTGTTTGAGCAGTTCAGAAGGGTTGCTAACCTCTATTTCCT...

Protein

2 records

下载 Protein FASTA

XP_057810904.1
MAGWRGSRGGGDGAPSEERIASSQTVRLGKVQPQAPGHRTVFCNDREANALAKFKGNSVSTTKYDVFTFLPKGLFEQFRRVANLYFLMISILSCTPVSPVSPITNVLPLTLVLLVSLVKEAWEDWKRFQNDMSINNSTVEVLQDWNWVPTPWKRLQVGDIIRVNQDGFFPADLIFLASTNPDGVCYVETANLDGETNLKIRKAPERTWDFVSPDKVSEFKGEVQCEQPNNSLYTFTGNLIIDKQILPLSPNQLLLRGCSL...

XP_057810905.1
MAGWRGSRGGGDGAPSEERIASSQTVRLGKVQPQAPGHRTVFCNDREANALAKFKGNSVSTTKYDVFTFLPKGLFEQFRRVANLYFLMISILSCTPVSPVSPITNVLPLTLVLLVSLVKEAWEDWKRFQNDMSINNSTVEVLQDWNWVPTPWKRLQVGDIIRVNQDGFFPADLIFLASTNPDGVCYVETANLDGETNLKIRKAPERTWDFVSPDKVSEFKGEVQCEQPNNSLYTFTGNLIIDKQILPLSPNQLLLRGCSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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