当前解析结果
SmilChr05G004203| 统一新 Gene ID | SmilChr05G004203 |
|---|---|
| 名称 | SmilChr05G004203 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 55904834 - 55908388 / - |
| NCBI Gene ID | LOC131025255 |
|---|---|
| GeneID | 131025255 |
| locus_tag | - |
| NCBI Name | LOC131025255 |
| 原始查询 | LOC131025255 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 |
| Arabidopsis | AT4G27290 (AT4G27290)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=53; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0556600- identity=45; qcov=1.05; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025255 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057810907.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057810907.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057810907.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057810907.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057810907.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:55905028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B88,C5 |
Chr5:55905265 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B29,B57,D8 |
Chr5:55905295 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr5:55905519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:55905534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B78,B88,C5 |
Chr5:55905546 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr5:55905665 |
C |
CG |
1bp_insertion | frameshift_variant | 1 | B65 |
Chr5:55905665 |
C |
CG |
1bp_insertion | CDS_variant | 1 | B65 |
Chr5:55905699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr5:55905705 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:55905780 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr5:55905980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C30,C45,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810907.1PF01453
B_lectin 76-180 aa
PF00954
S_locus_glycop 212-317 aa
PF08276
PAN_2 340-404 aa
PF00069
Pkinase 506-775 aa
PF07714
PK_Tyr_Ser-Thr 506-776 aa
PF11883
DUF3403 780-825 aa
XP_057810908.1PF01453
B_lectin 51-155 aa
PF00954
S_locus_glycop 187-292 aa
PF08276
PAN_2 315-379 aa
PF00069
Pkinase 481-750 aa
PF07714
PK_Tyr_Ser-Thr 481-751 aa
PF11883
DUF3403 755-800 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810907.1 |
Pfam | PF01453 |
B_lectin | Repeat | 76 | 180 | 5e-35 | 120.8 | D-mannose binding lectin |
XP_057810907.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 212 | 317 | 2.6e-25 | 89.8 | S-locus glycoprotein domain |
XP_057810907.1 |
Pfam | PF08276 |
PAN_2 | Domain | 340 | 404 | 8.7e-18 | 64.9 | PAN-like domain |
XP_057810907.1 |
Pfam | PF00069 |
Pkinase | Domain | 506 | 775 | 1.7e-41 | 143.1 | Protein kinase domain |
XP_057810907.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 506 | 776 | 6.8e-45 | 154.1 | Protein tyrosine and serine/threonine kinase |
XP_057810907.1 |
Pfam | PF11883 |
DUF3403 | Family | 780 | 825 | 2e-11 | 44.5 | Domain of unknown function (DUF3403) |
XP_057810908.1 |
Pfam | PF01453 |
B_lectin | Repeat | 51 | 155 | 4.8e-35 | 120.9 | D-mannose binding lectin |
XP_057810908.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 187 | 292 | 2.5e-25 | 89.9 | S-locus glycoprotein domain |
XP_057810908.1 |
Pfam | PF08276 |
PAN_2 | Domain | 315 | 379 | 8.3e-18 | 65.0 | PAN-like domain |
XP_057810908.1 |
Pfam | PF00069 |
Pkinase | Domain | 481 | 750 | 1.6e-41 | 143.2 | Protein kinase domain |
XP_057810908.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 481 | 751 | 6.4e-45 | 154.2 | Protein tyrosine and serine/threonine kinase |
XP_057810908.1 |
Pfam | PF11883 |
DUF3403 | Family | 755 | 800 | 1.9e-11 | 44.6 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。