Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004233`

染色体: Chr05 坐标: 56146778-56155058 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004233`
名称	SmilChr05G004233
描述	AP-1 complex subunit gamma-2-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56146778 - 56155058 / `-`

ID 对照

NCBI Gene ID	`LOC131025279`
GeneID	`131025279`
locus_tag	`-`
NCBI Name	`LOC131025279`
原始查询	`LOC131025279`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AP-1 complex subunit gamma-2-like
产物	AP-1 complex subunit gamma-2-like
Arabidopsis	`AT1G60070` (AT1G60070) Adaptor protein complex AP-1, gamma subunit [Source:NCBI gene (formerly Entrezgene);Acc:842301] identity=75.8; qcov=1; evalue=0; confidence=high
Rice	`Os06g0167100` - identity=67.5; qcov=1.01; evalue=0; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0006886 (intracellular protein transport); GO:0006896 (Golgi to vacuole transport); GO:0006898 (receptor-mediated endocytosis); GO:0030117 (membrane coat); GO:0030121 (AP-1 adaptor complex); GO:0035615 (clathrin-cargo adaptor activity)
KEGG	smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01602 (Adaptin_N); PF02883 (Alpha_adaptinC2)
InterPro	-
eggNOG	-
NR	GeneID:131025279

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057810961.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.80000	`XP_057810961.1`
3	Clathrin-coated vesicle	Clathrin-coated vesicle	0.80000	`XP_057810961.1`
4	Trans-golgi network	Trans-golgi network	0.80000	`XP_057810961.1`
5	Vesicle	囊泡	0.80000	`XP_057810961.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56147196`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:56147418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr5:56147667`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B10,B140,B35,C54
`Chr5:56147688`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:56147724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:56147786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr5:56147797`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr5:56147948`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B48,B77
`Chr5:56147961`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr5:56148037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,B79,B93,B95,D5
`Chr5:56148094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:56148427`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810961.1

881 aa

440

881

Adaptin_N

Alpha_adaptinC2

PF01602 Adaptin_N 26-578 aa PF02883 Alpha_adaptinC2 765-878 aa

XP_057810962.1

879 aa

440

879

Adaptin_N

Alpha_adaptinC2

PF01602 Adaptin_N 26-578 aa PF02883 Alpha_adaptinC2 763-876 aa

XP_057810963.1

877 aa

438

877

Adaptin_N

Alpha_adaptinC2

PF01602 Adaptin_N 26-578 aa PF02883 Alpha_adaptinC2 761-874 aa

XP_057810964.1

875 aa

438

875

Adaptin_N

Alpha_adaptinC2

PF01602 Adaptin_N 26-578 aa PF02883 Alpha_adaptinC2 759-872 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810961.1`	Pfam	`PF01602`	Adaptin_N	Repeat	26	578	4.8e-147	491.4	Adaptin N terminal region
`XP_057810961.1`	Pfam	`PF02883`	Alpha_adaptinC2	Domain	765	878	3.1e-32	111.8	Adaptin C-terminal domain
`XP_057810962.1`	Pfam	`PF01602`	Adaptin_N	Repeat	26	578	4.8e-147	491.4	Adaptin N terminal region
`XP_057810962.1`	Pfam	`PF02883`	Alpha_adaptinC2	Domain	763	876	3.1e-32	111.8	Adaptin C-terminal domain
`XP_057810963.1`	Pfam	`PF01602`	Adaptin_N	Repeat	26	578	4.7e-147	491.4	Adaptin N terminal region
`XP_057810963.1`	Pfam	`PF02883`	Alpha_adaptinC2	Domain	761	874	3.1e-32	111.8	Adaptin C-terminal domain
`XP_057810964.1`	Pfam	`PF01602`	Adaptin_N	Repeat	26	578	4.7e-147	491.4	Adaptin N terminal region
`XP_057810964.1`	Pfam	`PF02883`	Alpha_adaptinC2	Domain	759	872	3.1e-32	111.8	Adaptin C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057954981.1
CAACGCCGCACCGCACAGGAACATTCCTCCCGCGAAAGGAGAAATTTTTTCCAGTGCGCAATTTCTAAAATTTCCATCTCCTGCTTCAATGCCATCATCGTCATCATATGCACACAAGAGTTTCCACCATTAAATTCGATCGATTTCGCCATTTGTTCCGATCAATCAGCTCTCAATCTGCGCCATTTATCAGCTCGTTTGTCCGAAATTGAGTATCTCAGATTTTATTCTTCACCTCCTGCAGATCTCTCGGTCGGTTT...

XM_057954980.1
CAACGCCGCACCGCACAGGAACATTCCTCCCGCGAAAGGAGAAATTTTTTCCAGTGCGCAATTTCTAAAATTTCCATCTCCTGCTTCAATGCCATCATCGTCATCATATGCACACAAGAGTTTCCACCATTAAATTCGATCGATTTCGCCATTTGTTCCGATCAATCAGCTCTCAATCTGCGCCATTTATCAGCTCGTTTGTCCGAAATTGAGTATCTCAGATTTTATTCTTCACCTCCTGCAGATCTCTCGGTCGGTTT...

CDS

4 records

下载 CDS FASTA

LOC131025279
ATGAATCCGTTTTCCTCTGGCACGCGGATGAGGGACATGATTAGAGCCATACGTGCATGCAAAACTGCAGCCGAGGAACGAGCTGTTGTAAGAAAAGAATGTGCTGCAATTCGAGCTGCAATTAGTGAAAATGACCAAGATTATAGCCATCGCAATTTGGCGAAGCTCATGTTTATTCACATGCTTGGATACCCAACACATTTTGGTCAAATGGAGTGCCTGAAGTTAATTGCATCACCGGGATTCCCAGAGAAGAGAAT...

Protein

4 records

下载 Protein FASTA

XP_057810961.1
MNPFSSGTRMRDMIRAIRACKTAAEERAVVRKECAAIRAAISENDQDYSHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSIKQDLNHTNQYIVGLALCALGNIGSAEMARDLAPDVERLLQFRDPNIRKKAALCTIRIIKKVPDLAENFINPAAALLKEKHHGVLITGVRLCTDLCKISDEALEYFKKKSIDGLVKLLRDLTNSPYAPEYDISGITDPFLHIRLLKLLRVL...

XP_057810962.1
MNPFSSGTRMRDMIRAIRACKTAAEERAVVRKECAAIRAAISENDQDYSHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSIKQDLNHTNQYIVGLALCALGNIGSAEMARDLAPDVERLLQFRDPNIRKKAALCTIRIIKKVPDLAENFINPAAALLKEKHHGVLITGVRLCTDLCKISDEALEYFKKKSIDGLVKLLRDLTNSPYAPEYDISGITDPFLHIRLLKLLRVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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