当前解析结果
SmilChr05G004240| 统一新 Gene ID | SmilChr05G004240 |
|---|---|
| 名称 | SmilChr05G004240 |
| 描述 | U-box domain-containing protein 19-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 56209559 - 56211841 / + |
| NCBI Gene ID | LOC131025285 |
|---|---|
| GeneID | 131025285 |
| locus_tag | - |
| NCBI Name | LOC131025285 |
| 原始查询 | LOC131025285 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 19-like |
| 产物 | U-box domain-containing protein 19-like |
| Arabidopsis | AT1G60190 (PUB19)ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842314] identity=43.4; qcov=1.02; evalue=4.64e-175; confidence=medium |
| Rice | Os09g0378700 (OsPUB6)- identity=41.4; qcov=0.999; evalue=6.81e-125; confidence=medium |
| GO | GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF00514 (Arm); PF04564 (U-box); PF11789 (zf-Nse); PF13445 (zf-RING_UBOX); PF25598 (ARM_PUB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025285 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057810975.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057810975.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057810975.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810975.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810975.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:56209609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,B77 |
Chr5:56209628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:56209748 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,B18,B65 |
Chr5:56209900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr5:56209910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B11,B138,B94,C29,C70 |
Chr5:56210009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr5:56210044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B29,B51,B63,C77 |
Chr5:56210115 |
TC |
T |
1bp_deletion | frameshift_variant | 9 | A15,B103,B114,B136,B21,B25,B95,C36,C75 |
Chr5:56210122 |
CGG |
C |
2bp_deletion | frameshift_variant | 35 | A25,B113,B12,B120,B122,B125,B133,B137,B22,B49,B54,B55,B68,B74,B79,B81,B86,B90,B92,B95,C13,C18,C21,C25,C36,C37,C38,C4,C53,C55,C57,C76,C78,C81,C86 |
Chr5:56210127 |
T |
TCC |
2bp_insertion | frameshift_variant | 35 | A25,B113,B12,B120,B122,B125,B133,B137,B22,B49,B54,B55,B68,B74,B79,B81,B86,B90,B92,B95,C13,C18,C21,C25,C36,C37,C38,C4,C53,C55,C57,C76,C78,C81,C86 |
Chr5:56210130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B56,B81,B96,C43,C79 |
Chr5:56210138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B11,B138,B94,C29,C70 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810975.1PF04564
U-box 278-345 aa
PF11789
zf-Nse 280-322 aa
PF13445
zf-RING_UBOX 283-319 aa
PF25598
ARM_PUB 381-670 aa
PF00514
Arm 408-444 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810975.1 |
Pfam | PF04564 |
U-box | Domain | 278 | 345 | 3e-20 | 72.9 | U-box domain |
XP_057810975.1 |
Pfam | PF11789 |
zf-Nse | Domain | 280 | 322 | 4.8e-07 | 30.2 | Zinc-finger of the MIZ type in Nse subunit |
XP_057810975.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 283 | 319 | 1.2e-06 | 29.2 | RING-type zinc-finger |
XP_057810975.1 |
Pfam | PF25598 |
ARM_PUB | Repeat | 381 | 670 | 4.8e-20 | 72.9 | Plant U-box protein ARM repeat region |
XP_057810975.1 |
Pfam | PF00514 |
Arm | Repeat | 408 | 444 | 1e-11 | 45.1 | Armadillo/beta-catenin-like repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。