Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004249`

染色体: Chr05 坐标: 56288751-56291561 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004249`
名称	SmilChr05G004249
描述	ADP-ribosylation factor 2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56288751 - 56291561 / `-`

ID 对照

NCBI Gene ID	`LOC131025295`
GeneID	`131025295`
locus_tag	`-`
NCBI Name	`LOC131025295`
原始查询	`LOC131025295`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-ribosylation factor 2
产物	ADP-ribosylation factor 2
Arabidopsis	`AT5G14670` (ARFA1B) ADP-ribosylation factor A1B [Source:NCBI gene (formerly Entrezgene);Acc:831319] identity=98.9; qcov=1; evalue=1.28e-133; confidence=high
Rice	`Os05g0489600` (ARF) - identity=99.5; qcov=1; evalue=6.68e-135; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0006886 (intracellular protein transport); GO:0016192 (vesicle-mediated transport)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF04670 (Gtr1_RagA); PF08477 (Roc); PF09439 (SRPRB)
InterPro	-
eggNOG	-
NR	GeneID:131025295

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057810986.1`
2	Trans-golgi network	Trans-golgi network	1.00000	`XP_057810986.1`
3	Vesicle	囊泡	1.00000	`XP_057810986.1`
4	Endosome	内体	1.00000	`XP_057810986.1`
5	Endosome membrane	内体膜	0.80000	`XP_057810989.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56288979`	`C`	`T`	EMS_canonical_SNV	stop_gained	42	A20,A21,A8,A9,B101,B105,B108,B109,B11,B110,B112,B12,B131,B140,B2,B24,B34,B35,B42,B43,B44,B95,B97,B98,B99,C14,C18,C2,C20,C21,C25,C27,C3,C35,C39,C52,C54,C58,C7,C79,C82,C87
`Chr5:56288987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr5:56289029`	`A`	`AC`	1bp_insertion	frameshift_variant	36	A21,B107,B119,B120,B132,B17,B19,B21,B3,B30,B32,B33,B37,B38,B39,B45,B5,B61,B69,B76,C10,C15,C16,C33,C4,C51,C53,C61,C63,C64,C66,C71,C84,C86,D5,D9
`Chr5:56289142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C46
`Chr5:56289181`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B1,B10,B68
`Chr5:56290568`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B15,B21,B33,B76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810985.1

256 aa

128

256

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 5-162 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-140 aa PF00071 Ras 19-172 aa

XP_057810986.1

189 aa

189

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 5-177 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-141 aa PF00071 Ras 19-173 aa

XP_057810987.1

187 aa

187

Arf

SRPRB

MMR_HSR1

Roc

Ras

Gtr1_RagA

PF00025 Arf 5-162 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF00071 Ras 19-140 aa PF04670 Gtr1_RagA 19-140 aa

XP_057810988.1

183 aa

183

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 5-164 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-140 aa PF00071 Ras 19-144 aa

XP_057810989.1

181 aa

181

Arf

SRPRB

MMR_HSR1

Roc

Gtr1_RagA

Ras

PF00025 Arf 5-177 aa PF09439 SRPRB 16-143 aa PF01926 MMR_HSR1 19-122 aa PF08477 Roc 19-129 aa PF04670 Gtr1_RagA 19-141 aa PF00071 Ras 19-173 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810985.1`	Pfam	`PF00025`	Arf	Domain	5	162	2.7e-72	242.6	ADP-ribosylation factor family
`XP_057810985.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	1e-12	48.5	Signal recognition particle receptor beta subunit
`XP_057810985.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	0.00013	22.8	50S ribosome-binding GTPase
`XP_057810985.1`	Pfam	`PF08477`	Roc	Domain	19	129	1.6e-13	51.7	Ras of Complex, Roc, domain of DAPkinase
`XP_057810985.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	140	3.9e-09	37.0	Gtr1/RagA G protein conserved region
`XP_057810985.1`	Pfam	`PF00071`	Ras	Domain	19	172	5.8e-12	46.2	Ras family
`XP_057810986.1`	Pfam	`PF00025`	Arf	Domain	5	177	1.4e-81	272.8	ADP-ribosylation factor family
`XP_057810986.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	5e-13	49.5	Signal recognition particle receptor beta subunit
`XP_057810986.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	7.3e-05	23.6	50S ribosome-binding GTPase
`XP_057810986.1`	Pfam	`PF08477`	Roc	Domain	19	129	7e-14	52.8	Ras of Complex, Roc, domain of DAPkinase
`XP_057810986.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	141	1.7e-09	38.2	Gtr1/RagA G protein conserved region
`XP_057810986.1`	Pfam	`PF00071`	Ras	Domain	19	173	6e-12	46.2	Ras family
`XP_057810987.1`	Pfam	`PF00025`	Arf	Domain	5	162	1.3e-72	243.7	ADP-ribosylation factor family
`XP_057810987.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	4.3e-13	49.8	Signal recognition particle receptor beta subunit
`XP_057810987.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	7.1e-05	23.6	50S ribosome-binding GTPase
`XP_057810987.1`	Pfam	`PF08477`	Roc	Domain	19	129	7.5e-14	52.7	Ras of Complex, Roc, domain of DAPkinase
`XP_057810987.1`	Pfam	`PF00071`	Ras	Domain	19	140	1.6e-11	44.7	Ras family
`XP_057810987.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	140	1.8e-09	38.1	Gtr1/RagA G protein conserved region
`XP_057810988.1`	Pfam	`PF00025`	Arf	Domain	5	164	6.9e-73	244.5	ADP-ribosylation factor family
`XP_057810988.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	3.1e-13	50.2	Signal recognition particle receptor beta subunit
`XP_057810988.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	6.6e-05	23.7	50S ribosome-binding GTPase
`XP_057810988.1`	Pfam	`PF08477`	Roc	Domain	19	129	6.8e-14	52.9	Ras of Complex, Roc, domain of DAPkinase
`XP_057810988.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	140	1.7e-09	38.2	Gtr1/RagA G protein conserved region
`XP_057810988.1`	Pfam	`PF00071`	Ras	Domain	19	144	1.2e-11	45.2	Ras family
`XP_057810989.1`	Pfam	`PF00025`	Arf	Domain	5	177	1.2e-81	273.0	ADP-ribosylation factor family
`XP_057810989.1`	Pfam	`PF09439`	SRPRB	Domain	16	143	4.5e-13	49.7	Signal recognition particle receptor beta subunit
`XP_057810989.1`	Pfam	`PF01926`	MMR_HSR1	Family	19	122	6.6e-05	23.7	50S ribosome-binding GTPase
`XP_057810989.1`	Pfam	`PF08477`	Roc	Domain	19	129	7.1e-14	52.8	Ras of Complex, Roc, domain of DAPkinase
`XP_057810989.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	19	141	1.6e-09	38.3	Gtr1/RagA G protein conserved region
`XP_057810989.1`	Pfam	`PF00071`	Ras	Domain	19	173	5.3e-12	46.3	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057955006.1
CCGATATAAATAATCATTGGTTGACGATTCTCAATCCTCCTTCCGAAAATTGTTATTAGTATCTCGCGTTGTTCTCAGGCAGCTCCACATTTCTCTCTCTCGCGCCAGCAGGAACACACTTTCTCTCTCTAGCGCCTCCGCCAAATCTATCGTTCCAAGAGATCAAAAGCAAGAAAGAGAAATGGGGTTGACATTCACAAAGCTTTTTAGCCGGCTTTTTGCCAAGAAGGAGATGCGCATATTGATGGTTGGTCTTGATG...

XM_057955003.1
CCGATATAAATAATCATTGGTTGACGATTCTCAATCCTCCTTCCGAAAATTGTTATTAGTATCTCGCGTTGTTCTCAGGCAGCTCCACATTTCTCTCTCTCGCGCCAGCAGGAACACACTTTCTCTCTCTAGCGCCTCCGCCAAATCTATCGTTCCAAGAGATCAAAAGCAAGAAAGAGAAATGGGGTTGACATTCACAAAGCTTTTTAGCCGGCTTTTTGCCAAGAAGGAGATGCGCATATTGATGGTTGGTCTTGATG...

CDS

5 records

下载 CDS FASTA

LOC131025295
ATGGGGTTGACATTCACAAAGCTTTTTAGCCGGCTTTTTGCCAAGAAGGAGATGCGCATATTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATCCTGTACAAGCTCAAGCTCGGAGAGATTGTTACTACTATTCCTACCATTGGCTTCAATGTGGAGACTGTCGAATACAAGAACATCAGCTTCACCGTTTGGGATGTCGGGGGTCAGGACAAGATCCGCCCATTGTGGAGGCACTACTTCCAGAACACTCAGGG...

Protein

5 records

下载 Protein FASTA

XP_057810985.1
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYMFLTCEISTSLAVYMIFTCLSFLPGTSRALVPPPVRGSTRDSTGSPTTLLTRQVVGIHTSHNFTLKSALKLSLVISVVSSDSDSAKLIITGLELFWSCLRES

XP_057810986.1
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKASSWDTYIT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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