Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002428`

染色体: Chr01 坐标: 41818157-41820576 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002428`
名称	SmilChr01G002428
描述	flavin-containing monooxygenase FMO GS-OX-like 4
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	41818157 - 41820576 / `+`

ID 对照

NCBI Gene ID	`LOC131025301`
GeneID	`131025301`
locus_tag	`-`
NCBI Name	`LOC131025301`
原始查询	`LOC131025301`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	flavin-containing monooxygenase FMO GS-OX-like 4
产物	flavin-containing monooxygenase FMO GS-OX-like 4
Arabidopsis	`AT1G62620` (AT1G62620) Flavin-binding monooxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842559] identity=58.4; qcov=0.956; evalue=0; confidence=high
Rice	`Os10g0553800` - identity=54.9; qcov=0.919; evalue=7.18e-164; confidence=high
GO	GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGG	-
Pfam	PF00743 (FMO-like); PF00890 (FAD_binding_2); PF01266 (DAO); PF01593 (Amino_oxidase); PF07992 (Pyr_redox_2); PF12831 (FAD_oxidored); PF13450 (NAD_binding_8); PF13738 (Pyr_redox_3)
InterPro	-
eggNOG	-
NR	GeneID:131025301

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057810999.1`
2	Cytoplasm	细胞质	0.40000	`XP_057810999.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057811010.1`
4	Nucleus	细胞核	0.00000	`XP_057810999.1`
5	Chromosome	染色体	0.00000	`XP_057810999.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:41818215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr1:41818268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr1:41818372`	`A`	`AC`	1bp_insertion	frameshift_variant	10	B124,B20,B33,B45,B65,B8,C13,C20,C25,C72
`Chr1:41818441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B80,C38,C60,D4
`Chr1:41818445`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr1:41818467`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr1:41818488`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B129,B57
`Chr1:41818515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr1:41818517`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,B24,D2
`Chr1:41818521`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B57
`Chr1:41818533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr1:41818541`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B119

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810999.1

470 aa

235

470

FMO-like

Pyr_redox_2

DAO

FAD_oxidored

FAD_binding_2

NAD_binding_8

Amino_oxidase

Pyr_redox_3

FMO-like

PF00743 FMO-like 30-257 aa PF07992 Pyr_redox_2 31-310 aa PF01266 DAO 32-67 aa PF12831 FAD_oxidored 32-69 aa PF00890 FAD_binding_2 32-70 aa PF13450 NAD_binding_8 34-70 aa PF01593 Amino_oxidase 40-67 aa PF13738 Pyr_redox_3 122-264 aa PF00743 FMO-like 281-383 aa

XP_057811010.1

460 aa

230

460

FMO-like

Pyr_redox_2

DAO

FAD_oxidored

FAD_binding_2

NAD_binding_8

Amino_oxidase

Pyr_redox_3

FMO-like

XP_057811020.1

482 aa

241

482

FMO-like

Pyr_redox_2

DAO

FAD_oxidored

FAD_binding_2

NAD_binding_8

Amino_oxidase

Pyr_redox_3

FMO-like

PF00743 FMO-like 30-269 aa PF07992 Pyr_redox_2 31-322 aa PF01266 DAO 32-67 aa PF12831 FAD_oxidored 32-69 aa PF00890 FAD_binding_2 32-70 aa PF13450 NAD_binding_8 34-70 aa PF01593 Amino_oxidase 40-67 aa PF13738 Pyr_redox_3 122-330 aa PF00743 FMO-like 293-395 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810999.1`	Pfam	`PF00743`	FMO-like	Family	30	257	1.8e-49	169.4	Flavin-binding monooxygenase-like
`XP_057810999.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	31	310	6.7e-15	56.0	Pyridine nucleotide-disulphide oxidoreductase
`XP_057810999.1`	Pfam	`PF01266`	DAO	Domain	32	67	8.9e-13	49.2	FAD dependent oxidoreductase
`XP_057810999.1`	Pfam	`PF12831`	FAD_oxidored	Family	32	69	1.2e-07	32.1	FAD dependent oxidoreductase
`XP_057810999.1`	Pfam	`PF00890`	FAD_binding_2	Domain	32	70	3.3e-08	33.9	FAD binding domain
`XP_057810999.1`	Pfam	`PF13450`	NAD_binding_8	Domain	34	70	1.3e-10	42.2	NAD(P)-binding Rossmann-like domain
`XP_057810999.1`	Pfam	`PF01593`	Amino_oxidase	Domain	40	67	1.7e-06	28.4	Flavin containing amine oxidoreductase
`XP_057810999.1`	Pfam	`PF13738`	Pyr_redox_3	Family	122	264	3.4e-21	76.5	Pyridine nucleotide-disulphide oxidoreductase
`XP_057810999.1`	Pfam	`PF00743`	FMO-like	Family	281	383	1.8e-49	169.4	Flavin-binding monooxygenase-like
`XP_057811010.1`	Pfam	`PF00743`	FMO-like	Family	30	257	2e-49	169.2	Flavin-binding monooxygenase-like
`XP_057811010.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	31	310	6.2e-15	56.1	Pyridine nucleotide-disulphide oxidoreductase
`XP_057811010.1`	Pfam	`PF01266`	DAO	Domain	32	67	8.6e-13	49.3	FAD dependent oxidoreductase
`XP_057811010.1`	Pfam	`PF12831`	FAD_oxidored	Family	32	69	1.2e-07	32.1	FAD dependent oxidoreductase
`XP_057811010.1`	Pfam	`PF00890`	FAD_binding_2	Domain	32	70	3.2e-08	33.9	FAD binding domain
`XP_057811010.1`	Pfam	`PF13450`	NAD_binding_8	Domain	34	70	1.2e-10	42.2	NAD(P)-binding Rossmann-like domain
`XP_057811010.1`	Pfam	`PF01593`	Amino_oxidase	Domain	40	67	1.8e-06	28.2	Flavin containing amine oxidoreductase
`XP_057811010.1`	Pfam	`PF13738`	Pyr_redox_3	Family	122	264	3.1e-21	76.6	Pyridine nucleotide-disulphide oxidoreductase
`XP_057811010.1`	Pfam	`PF00743`	FMO-like	Family	281	383	2e-49	169.2	Flavin-binding monooxygenase-like
`XP_057811020.1`	Pfam	`PF00743`	FMO-like	Family	30	269	1.1e-45	156.8	Flavin-binding monooxygenase-like
`XP_057811020.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	31	322	4.8e-13	49.9	Pyridine nucleotide-disulphide oxidoreductase
`XP_057811020.1`	Pfam	`PF01266`	DAO	Domain	32	67	1.5e-12	48.5	FAD dependent oxidoreductase
`XP_057811020.1`	Pfam	`PF12831`	FAD_oxidored	Family	32	69	1.3e-07	32.0	FAD dependent oxidoreductase
`XP_057811020.1`	Pfam	`PF00890`	FAD_binding_2	Domain	32	70	3.4e-08	33.8	FAD binding domain
`XP_057811020.1`	Pfam	`PF13450`	NAD_binding_8	Domain	34	70	1.3e-10	42.1	NAD(P)-binding Rossmann-like domain
`XP_057811020.1`	Pfam	`PF01593`	Amino_oxidase	Domain	40	67	2e-06	28.1	Flavin containing amine oxidoreductase
`XP_057811020.1`	Pfam	`PF13738`	Pyr_redox_3	Family	122	330	3.5e-17	63.3	Pyridine nucleotide-disulphide oxidoreductase
`XP_057811020.1`	Pfam	`PF00743`	FMO-like	Family	293	395	1.1e-45	156.8	Flavin-binding monooxygenase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057955016.1
TGCACATGCACTCAACAACAATCCAAATGCCTATTCCCAACCCGACGCCGACACTCCACTTCCCCCTCCCGGCGGTGCCGTCAGCCATCTCCAGAGCCGTCGCCGTCATCGGAGCCGGGGCCGCCGGACTTTGCGCCGCCCTTGAACTCCGACGAGAAGGTCACAGCGTCGTTGTGTACGAGCGGCAAGACAAGCTAGGCGGCACATGGGCCTACACCCCCCAAACAGAGGCTGACCCGTTAGGCCTCGACCCGACCCGG...

XM_057955037.1
CACATGCACTCAACAACAATCCAAATGCCTATTCCCAACCCGACGCCGACACTCCACTTCCCCCTCCCGGCGGTGCCGTCAGCCATCTCCAGAGCCGTCGCCGTCATCGGAGCCGGGGCCGCCGGACTTTGCGCCGCCCTTGAACTCCGACGAGAAGGTCACAGCGTCGTTGTGTACGAGCGGCAAGACAAGCTAGGCGGCACATGGGCCTACACCCCCCAAACAGAGGCTGACCCGTTAGGCCTCGACCCGACCCGGAA...

CDS

3 records

下载 CDS FASTA

LOC131025301
ATGCACTCAACAACAATCCAAATGCCTATTCCCAACCCGACGCCGACACTCCACTTCCCCCTCCCGGCGGTGCCGTCAGCCATCTCCAGAGCCGTCGCCGTCATCGGAGCCGGGGCCGCCGGACTTTGCGCCGCCCTTGAACTCCGACGAGAAGGTCACAGCGTCGTTGTGTACGAGCGGCAAGACAAGCTAGGCGGCACATGGGCCTACACCCCCCAAACAGAGGCTGACCCGTTAGGCCTCGACCCGACCCGGAACGT...

Protein

3 records

下载 Protein FASTA

XP_057810999.1
MHSTTIQMPIPNPTPTLHFPLPAVPSAISRAVAVIGAGAAGLCAALELRREGHSVVVYERQDKLGGTWAYTPQTEADPLGLDPTRNVVHSSVYASLRTNLPREVMGFRVYPFVASGKPGRDPRRFPGHEEVLEYLRDFAEEFELAEMVRFGREVCHVGKAADDRRWVVKSKRKGGGDGDDQVYDAVVICNGHYSEPRIVDLPGIEEWPGKQIHSHNYRVPDPFHDQVVVLIGSAASADDISRDIAKFAKEVHVASRSAQI...

XP_057811010.1
MHSTTIQMPIPNPTPTLHFPLPAVPSAISRAVAVIGAGAAGLCAALELRREGHSVVVYERQDKLGGTWAYTPQTEADPLGLDPTRNVVHSSVYASLRTNLPREVMGFRVYPFVASGKPGRDPRRFPGHEEVLEYLRDFAEEFELAEMVRFGREVCHVGKAADDRRWVVKSKRKGGGDGDDQVYDAVVICNGHYSEPRIVDLPGIEEWPGKQIHSHNYRVPDPFHDQVVVLIGSAASADDISRDIAKFAKEVHVASRSAQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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