Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004256`

染色体: Chr05 坐标: 56362516-56377269 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004256`
名称	SmilChr05G004256
描述	homeobox protein knotted-1-like 6
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56362516 - 56377269 / `+`

ID 对照

NCBI Gene ID	`LOC131025305`
GeneID	`131025305`
locus_tag	`-`
NCBI Name	`LOC131025305`
原始查询	`LOC131025305`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox protein knotted-1-like 6
产物	homeobox protein knotted-1-like 6
Arabidopsis	`AT1G23380` (KNAT6) homeobox protein knotted-1-like 6 [Source:NCBI gene (formerly Entrezgene);Acc:838946] identity=59.3; qcov=1.03; evalue=1.46e-97; confidence=high
Rice	`Os01g0302500` (OSH6) - identity=51.3; qcov=0.727; evalue=5.93e-51; confidence=high
GO	GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00046 (Homeodomain); PF03790 (KNOX1); PF03791 (KNOX2); PF05920 (Homeobox_KN)
InterPro	-
eggNOG	-
NR	GeneID:131025305

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811003.1`
2	Chromosome	染色体	0.00000	`XP_057811003.1`
3	Centromere	着丝粒	0.00000	`XP_057811003.1`
4	Chromatin	染色质	0.00000	`XP_057811003.1`
5	Telomere	端粒	0.00000	`XP_057811003.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56371210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B110,D9
`Chr5:56371240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B110,D9
`Chr5:56371414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B14,B3,B61,C51,C61
`Chr5:56371826`	`T`	`TTC`	2bp_insertion	frameshift_variant	12	A2,A24,B101,B110,B2,B22,B24,B28,B66,B93,C45,C73
`Chr5:56376048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:56376095`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B3,C38,C72
`Chr5:56376134`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,D4
`Chr5:56376218`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A23,B131
`Chr5:56376239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B139,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811003.1

325 aa

162

325

KNOX1

KNOX2

Homeobox_KN

Homeodomain

PF03790 KNOX1 85-126 aa PF03791 KNOX2 138-191 aa PF05920 Homeobox_KN 261-300 aa PF00046 Homeodomain 268-301 aa

XP_057811004.1

320 aa

160

320

KNOX1

KNOX2

Homeobox_KN

Homeodomain

PF03790 KNOX1 85-126 aa PF03791 KNOX2 138-188 aa PF05920 Homeobox_KN 256-295 aa PF00046 Homeodomain 263-296 aa

XP_057811005.1

318 aa

159

318

KNOX1

KNOX2

Homeobox_KN

Homeodomain

PF03790 KNOX1 85-126 aa PF03791 KNOX2 138-184 aa PF05920 Homeobox_KN 254-293 aa PF00046 Homeodomain 261-294 aa

XP_057811006.1

313 aa

156

313

KNOX1

KNOX2

Homeobox_KN

Homeodomain

PF03790 KNOX1 85-126 aa PF03791 KNOX2 138-181 aa PF05920 Homeobox_KN 249-288 aa PF00046 Homeodomain 256-289 aa

XP_057811007.1

306 aa

153

306

KNOX1

KNOX2

Homeobox_KN

Homeodomain

PF03790 KNOX1 66-107 aa PF03791 KNOX2 119-172 aa PF05920 Homeobox_KN 242-281 aa PF00046 Homeodomain 249-282 aa

XP_057811008.1

306 aa

153

306

KNOX1

KNOX2

Homeobox_KN

Homeodomain

PF03790 KNOX1 66-107 aa PF03791 KNOX2 119-172 aa PF05920 Homeobox_KN 242-281 aa PF00046 Homeodomain 249-282 aa

XP_057811011.1

299 aa

150

299

KNOX1

KNOX2

Homeobox_KN

Homeodomain

PF03790 KNOX1 66-107 aa PF03791 KNOX2 119-165 aa PF05920 Homeobox_KN 235-274 aa PF00046 Homeodomain 242-275 aa

XP_057811012.1

294 aa

147

294

KNOX1

KNOX2

Homeobox_KN

Homeodomain

PF03790 KNOX1 66-107 aa PF03791 KNOX2 119-162 aa PF05920 Homeobox_KN 230-269 aa PF00046 Homeodomain 237-270 aa

XP_057811013.1

278 aa

139

278

KNOX1

KNOX2

PF03790 KNOX1 85-126 aa PF03791 KNOX2 138-191 aa

XP_057811014.1

271 aa

136

271

KNOX1

KNOX2

PF03790 KNOX1 85-126 aa PF03791 KNOX2 138-184 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811003.1`	Pfam	`PF03790`	KNOX1	Family	85	126	8.2e-21	74.2	KNOX1 domain
`XP_057811003.1`	Pfam	`PF03791`	KNOX2	Family	138	191	5.6e-21	74.5	KNOX2 domain
`XP_057811003.1`	Pfam	`PF05920`	Homeobox_KN	Family	261	300	1.2e-18	67.3	Homeobox KN domain
`XP_057811003.1`	Pfam	`PF00046`	Homeodomain	Domain	268	301	1.8e-06	28.4	Homeodomain
`XP_057811004.1`	Pfam	`PF03790`	KNOX1	Family	85	126	8e-21	74.2	KNOX1 domain
`XP_057811004.1`	Pfam	`PF03791`	KNOX2	Family	138	188	3.1e-19	68.9	KNOX2 domain
`XP_057811004.1`	Pfam	`PF05920`	Homeobox_KN	Family	256	295	1.2e-18	67.4	Homeobox KN domain
`XP_057811004.1`	Pfam	`PF00046`	Homeodomain	Domain	263	296	1.8e-06	28.4	Homeodomain
`XP_057811005.1`	Pfam	`PF03790`	KNOX1	Family	85	126	7.8e-21	74.3	KNOX1 domain
`XP_057811005.1`	Pfam	`PF03791`	KNOX2	Family	138	184	3.6e-25	88.0	KNOX2 domain
`XP_057811005.1`	Pfam	`PF05920`	Homeobox_KN	Family	254	293	1.2e-18	67.4	Homeobox KN domain
`XP_057811005.1`	Pfam	`PF00046`	Homeodomain	Domain	261	294	2.3e-06	28.1	Homeodomain
`XP_057811006.1`	Pfam	`PF03790`	KNOX1	Family	85	126	7.6e-21	74.3	KNOX1 domain
`XP_057811006.1`	Pfam	`PF03791`	KNOX2	Family	138	181	2.5e-23	82.0	KNOX2 domain
`XP_057811006.1`	Pfam	`PF05920`	Homeobox_KN	Family	249	288	1.2e-18	67.4	Homeobox KN domain
`XP_057811006.1`	Pfam	`PF00046`	Homeodomain	Domain	256	289	2.2e-06	28.1	Homeodomain
`XP_057811007.1`	Pfam	`PF03790`	KNOX1	Family	66	107	7.4e-21	74.3	KNOX1 domain
`XP_057811007.1`	Pfam	`PF03791`	KNOX2	Family	119	172	4.9e-21	74.7	KNOX2 domain
`XP_057811007.1`	Pfam	`PF05920`	Homeobox_KN	Family	242	281	1.1e-18	67.5	Homeobox KN domain
`XP_057811007.1`	Pfam	`PF00046`	Homeodomain	Domain	249	282	1.7e-06	28.5	Homeodomain
`XP_057811008.1`	Pfam	`PF03790`	KNOX1	Family	66	107	7.4e-21	74.3	KNOX1 domain
`XP_057811008.1`	Pfam	`PF03791`	KNOX2	Family	119	172	4.9e-21	74.7	KNOX2 domain
`XP_057811008.1`	Pfam	`PF05920`	Homeobox_KN	Family	242	281	1.1e-18	67.5	Homeobox KN domain
`XP_057811008.1`	Pfam	`PF00046`	Homeodomain	Domain	249	282	1.7e-06	28.5	Homeodomain
`XP_057811011.1`	Pfam	`PF03790`	KNOX1	Family	66	107	7e-21	74.4	KNOX1 domain
`XP_057811011.1`	Pfam	`PF03791`	KNOX2	Family	119	165	3.2e-25	88.1	KNOX2 domain
`XP_057811011.1`	Pfam	`PF05920`	Homeobox_KN	Family	235	274	1.1e-18	67.5	Homeobox KN domain
`XP_057811011.1`	Pfam	`PF00046`	Homeodomain	Domain	242	275	2e-06	28.2	Homeodomain
`XP_057811012.1`	Pfam	`PF03790`	KNOX1	Family	66	107	6.8e-21	74.5	KNOX1 domain
`XP_057811012.1`	Pfam	`PF03791`	KNOX2	Family	119	162	2.3e-23	82.2	KNOX2 domain
`XP_057811012.1`	Pfam	`PF05920`	Homeobox_KN	Family	230	269	1e-18	67.6	Homeobox KN domain
`XP_057811012.1`	Pfam	`PF00046`	Homeodomain	Domain	237	270	2e-06	28.2	Homeodomain
`XP_057811013.1`	Pfam	`PF03790`	KNOX1	Family	85	126	6.1e-21	74.6	KNOX1 domain
`XP_057811013.1`	Pfam	`PF03791`	KNOX2	Family	138	191	4.3e-21	74.9	KNOX2 domain
`XP_057811014.1`	Pfam	`PF03790`	KNOX1	Family	85	126	5.7e-21	74.7	KNOX1 domain
`XP_057811014.1`	Pfam	`PF03791`	KNOX2	Family	138	184	2.8e-25	88.3	KNOX2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA

XM_057955025.1
GTCTCTCACAACAAACTCACCAACCTCAGAAAAATAAAGAAGAATGAATGAATGACATGACATAGAGATCCTTCTTTCTCAGCATATTTTGGCGTATGTAACTTTGAATGCTTGTTAATGACGGTTTTGTCTGCTGGATCAGTCAGATATATATAAGGGGCCACTCTTCCATCCCATCGCTTAAAACTCTTCACGCCAACGGACAAGGCGCTAATGTCGCCGGAGAATCTGATGATGGCGGCGGAGTACGGCGGGTACCA...

XM_057955024.1
TTATTATTCATTTATTATTAATTATTAACAAGTACTATAAAAACAAAGAATTCTTGAGAAACTAATAATGGAAAGAATGGGCCTTTGCTCTCCACTCTCACTCTCCTTCACCACCTCAATTCTTCGTTTCTTCTCCAAAAACCGTCGATCACAAGGCGCTAATGTCGCCGGAGAATCTGATGATGGCGGCGGAGTACGGCGGGTACCACTACGAGACTCTGGTTTCCGGCGGCGATCACCACCGGATTCCGGGGTTCGAA...

CDS

10 records

下载 CDS FASTA

LOC131025305
ATGGACGAAATGTATGGGATTCACTCAGCTGGTGATTTCTACGCAGACAAGGCGCTAATGTCGCCGGAGAATCTGATGATGGCGGCGGAGTACGGCGGGTACCACTACGAGACTCTGGTTTCCGGCGGCGATCACCACCGGATTCCGGGGTTCGAATCGGAGGAATTGGGATTCCAGTGCTCGGCGGTGTCGGAATCGGCCTCCATTAACGTTCGCGGCGAAGGGGATCACGACGAGGAGCAGGCTTCCACCGCGATCAA...

Protein

10 records

下载 Protein FASTA

XP_057811003.1
MDEMYGIHSAGDFYADKALMSPENLMMAAEYGGYHYETLVSGGDHHRIPGFESEELGFQCSAVSESASINVRGEGDHDEEQASTAIKAKIASHPCYPKLIDAFIDCQKVGAPPEIACLLDEIRREKDVCKHDAVSMCFEVDPELDEFMVLSLSKTETYCDVLVKYKRDLSRPFDEATSFLNKIENQLGNLCIDDGGLSSDEELSGGEAEANDPQMKTEDRELKDRLLRLYGDHINSLKLEFSKKKKKGKLPKEARQKLLE...

XP_057811004.1
MDEMYGIHSAGDFYADKALMSPENLMMAAEYGGYHYETLVSGGDHHRIPGFESEELGFQCSAVSESASINVRGEGDHDEEQASTAIKAKIASHPCYPKLIDAFIDCQKVGAPPEIACLLDEIRREKDVCKHDAVSMCFEVDPELDEFMVLSLSKTETYCDVLVKYKRDLSRPFDEATSFLNKIENQLDDGGLSSDEELSGGEAEANDPQMKTEDRELKDRLLRLYGDHINSLKLEFSKKKKKGKLPKEARQKLLEWWTVH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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