Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004257`

染色体: Chr05 坐标: 56379341-56382517 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004257`
名称	SmilChr05G004257
描述	2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56379341 - 56382517 / `+`

ID 对照

NCBI Gene ID	`LOC131025306`
GeneID	`131025306`
locus_tag	`-`
NCBI Name	`LOC131025306`
原始查询	`LOC131025306`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic
产物	2-phytyl-1%2C4-beta-naphthoquinone methyltransferase%2C chloroplastic
Arabidopsis	`AT1G23360` (MENG) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838945] identity=64.9; qcov=1; evalue=8.54e-122; confidence=high
Rice	`Os04g0507800` - identity=64.6; qcov=0.317; evalue=1.56e-36; confidence=low
GO	GO:0042372 (phylloquinone biosynthetic process); GO:0052624 (2-phytyl-1,4-naphthoquinone methyltransferase activity)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01135 (PCMT); PF01209 (Ubie_methyltran); PF07021 (MetW); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131025306

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057811015.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057811015.1`
3	Chloroplast thylakoid	类囊体	0.40000	`XP_057811015.1`
4	Nucleus	细胞核	0.00000	`XP_057811015.1`
5	Chromosome	染色体	0.00000	`XP_057811015.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56379472`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B48,B77
`Chr5:56381034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr5:56381262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr5:56381907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr5:56382227`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B52,B6,C50,C67,D7
`Chr5:56382230`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811015.1

259 aa

130

259

Ubie_methyltran

PCMT

MetW

Methyltransf_31

Methyltransf_23

Methyltransf_25

Methyltransf_12

Methyltransf_11

PF01209 Ubie_methyltran 34-253 aa PF01135 PCMT 62-153 aa PF07021 MetW 69-169 aa PF13847 Methyltransf_31 70-196 aa PF13489 Methyltransf_23 70-239 aa PF13649 Methyltransf_25 75-173 aa PF08242 Methyltransf_12 76-174 aa PF08241 Methyltransf_11 76-176 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811015.1`	Pfam	`PF01209`	Ubie_methyltran	Family	34	253	8.3e-58	196.2	ubiE/COQ5 methyltransferase family
`XP_057811015.1`	Pfam	`PF01135`	PCMT	Family	62	153	5.1e-07	30.4	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
`XP_057811015.1`	Pfam	`PF07021`	MetW	Family	69	169	5.2e-05	23.7	Methionine biosynthesis protein MetW
`XP_057811015.1`	Pfam	`PF13847`	Methyltransf_31	Domain	70	196	6e-23	82.0	Methyltransferase domain
`XP_057811015.1`	Pfam	`PF13489`	Methyltransf_23	Domain	70	239	1.4e-10	41.8	Methyltransferase domain
`XP_057811015.1`	Pfam	`PF13649`	Methyltransf_25	Domain	75	173	9.8e-21	75.0	Methyltransferase domain
`XP_057811015.1`	Pfam	`PF08242`	Methyltransf_12	Domain	76	174	1.1e-13	52.4	Methyltransferase domain
`XP_057811015.1`	Pfam	`PF08241`	Methyltransf_11	Domain	76	176	3.6e-18	66.7	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955032.1
GTCATGTATAAAAGGCGAATGAAATTGAAGAGAATCTCAACAGAAAAAGTGAAAAATGGCTGCACTTCAATTTGCTCTTCCCTCCATAGCCGGCGGCCGGCGCCGGCCGGAGTCACGGTCCATTGTCAGACCGGTGCGGTGCGCAGCTGACCGCCAGGCGCTTTTTAACCGCATTGCCCCTGTCTATGATAACTTGAATGATTTGTTTAGTTTAGGAAGGCATAGAGTGTGGAAGAGGATGACTGTTAATTGGAGCGGAG...

CDS

1 records

下载 CDS FASTA

LOC131025306
ATGGCTGCACTTCAATTTGCTCTTCCCTCCATAGCCGGCGGCCGGCGCCGGCCGGAGTCACGGTCCATTGTCAGACCGGTGCGGTGCGCAGCTGACCGCCAGGCGCTTTTTAACCGCATTGCCCCTGTCTATGATAACTTGAATGATTTGTTTAGTTTAGGAAGGCATAGAGTGTGGAAGAGGATGACTGTTAATTGGAGCGGAGTTAAAGAAGGAGATACTGTGTTGGATGTTTGTTGTGGAAGTGGGGATTTGGCTTT...

Protein

1 records

下载 Protein FASTA

XP_057811015.1
MAALQFALPSIAGGRRRPESRSIVRPVRCAADRQALFNRIAPVYDNLNDLFSLGRHRVWKRMTVNWSGVKEGDTVLDVCCGSGDLAFLLSEKVGINGKVIALDFSKEQLQIAANRQSERSKACYKNIEWIEGDAVNLPFSRSSFDAATIGYGLRNIVDRRKAMEEMYKVLKPGSKVSILDFNKSTSSLNSSIQDWMIDYIVVPIASGYGLANEYHYLKNSIKEYLTGNELEKLAAETGFSEAKFYEIGAGFMGNLVATR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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