Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004260`

染色体: Chr05 坐标: 56396303-56404274 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004260`
名称	SmilChr05G004260
描述	cysteine-rich receptor-like protein kinase 2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56396303 - 56404274 / `-`

ID 对照

NCBI Gene ID	`LOC131025308`
GeneID	`131025308`
locus_tag	`-`
NCBI Name	`LOC131025308`
原始查询	`LOC131025308`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cysteine-rich receptor-like protein kinase 2
产物	cysteine-rich receptor-like protein kinase 2
Arabidopsis	`AT1G70520` (CRK2) cysteine-rich RLK (RECEPTOR-like protein kinase) 2 [Source:NCBI gene (formerly Entrezgene);Acc:843389] identity=57.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os05g0130100` - identity=46.8; qcov=0.804; evalue=1.63e-145; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131025308

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057811018.1`
2	Nucleus	细胞核	0.00000	`XP_057811018.1`
3	Chromosome	染色体	0.00000	`XP_057811018.1`
4	Centromere	着丝粒	0.00000	`XP_057811018.1`
5	Chromatin	染色质	0.00000	`XP_057811018.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56396469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,B8,C51
`Chr5:56396493`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B23
`Chr5:56396493`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B23
`Chr5:56396497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:56396501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr5:56396506`	`C`	`CTA`	2bp_insertion	frameshift_variant	1	B23
`Chr5:56396506`	`C`	`CTA`	2bp_insertion	CDS_variant	1	B23
`Chr5:56396507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B75,C22
`Chr5:56396532`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B72,C83
`Chr5:56396688`	`AGC`	`A`	2bp_deletion	frameshift_variant	1	B93
`Chr5:56396688`	`AGC`	`A`	2bp_deletion	CDS_variant	1	B93
`Chr5:56396706`	`T`	`TG`	1bp_insertion	frameshift_variant	9	A25,B139,B76,B79,C18,C35,C36,C5,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811018.1

689 aa

344

689

Stress-antifung

Pkinase

PK_Tyr_Ser-Thr

PF01657 Stress-antifung 91-170 aa PF01657 Stress-antifung 185-279 aa PF00069 Pkinase 362-583 aa PF07714 PK_Tyr_Ser-Thr 365-581 aa

XP_057811019.1

643 aa

322

643

Stress-antifung

Pkinase

PK_Tyr_Ser-Thr

PF01657 Stress-antifung 45-124 aa PF01657 Stress-antifung 139-233 aa PF00069 Pkinase 316-537 aa PF07714 PK_Tyr_Ser-Thr 319-535 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811018.1`	Pfam	`PF01657`	Stress-antifung	Family	91	170	9.8e-20	71.8	Salt stress response/antifungal
`XP_057811018.1`	Pfam	`PF01657`	Stress-antifung	Family	185	279	9.8e-20	71.8	Salt stress response/antifungal
`XP_057811018.1`	Pfam	`PF00069`	Pkinase	Domain	362	583	2.6e-44	152.3	Protein kinase domain
`XP_057811018.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	365	581	3.2e-45	155.2	Protein tyrosine and serine/threonine kinase
`XP_057811019.1`	Pfam	`PF01657`	Stress-antifung	Family	45	124	6.5e-20	72.4	Salt stress response/antifungal
`XP_057811019.1`	Pfam	`PF01657`	Stress-antifung	Family	139	233	6.5e-20	72.4	Salt stress response/antifungal
`XP_057811019.1`	Pfam	`PF00069`	Pkinase	Domain	316	537	2.3e-44	152.5	Protein kinase domain
`XP_057811019.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	319	535	2.7e-45	155.4	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009102131.1
TATCTGGGCTCACCCATGCATCTAGAATAATTAATTCAACATTTTCACCTTTATATATAGAGATAGTGGAGTTATAAAGTAACCCATTAATTCACAATAATTTCAGAGTAATGATAAATTCATTTTTTTTTATTATATATTATTTCTTAGTGTTTTTAAATGATTATGGAGCAAGCAACAAACCTTATCCCTTCAAATTTGATCATGTTTTCCTTTTTGTGTTAACTCTCTCTCTCTCTTGCAGAATTATGAGGCCCAAT...

XM_057955036.1
TTCTAAATAAATTTGATTTTATCTTTTCTTAGTTTGAAAAAAATGAAACATTTTAATATGAAAAGAGAATATTCAAAAACGTGGAAATCGTTGGACAGAATAAACGAGATCATAATGTTTTCCTGTGCTCTAAAGTTTTTGATATATACATTGTAACATTGAATTCCGACCAAACTTCACTTCTCTTTATCTCTCTCTCTAAATTATTATTATGATTACTATTGAATATTAATTATCCCTCACTTTTGTTGCCTGCGGAA...

CDS

2 records

下载 CDS FASTA

LOC131025308
ATGATAAATTCATTTTTTTTTATTATATATTATTTCTTAGTGTTTTTAAATGATTATGGAGCAAGCAACAAACCTTATCCCTTCAAATTTGATCATGTTTTCCTTTTTGTGTTAACTCTCTCTCTCTCTTGCAGAATTATGAGGCCCAATGCGATGATCATTCCTATGATGATTCTGCTATTTCCATTCACCTCATTTGCAGATCCAAGAGCTCAGGTTATCAAGCTCATCTGCGGCAAACAAATCGAGCAAAACGCCAC...

LOC131025308
ATGAGGCCCAATGCGATGATCATTCCTATGATGATTCTGCTATTTCCATTCACCTCATTTGCAGATCCAAGAGCTCAGGTTATCAAGCTCATCTGCGGCAAACAAATCGAGCAAAACGCCACCATTAACATGGCAAACTTCATATCCACCATGGACAAAATAACCGTCCAAATGCAAGCTTCGGGCCACGGCGCGGCGGCCACGGGCTCGGGCCGCCACGCCAGCTACGGGCTGGCACAATGCTACGGCGACCTCTCGCC...

Protein

2 records

下载 Protein FASTA

XP_057811018.1
MINSFFFIIYYFLVFLNDYGASNKPYPFKFDHVFLFVLTLSLSCRIMRPNAMIIPMMILLFPFTSFADPRAQVIKLICGKQIEQNATINMANFISTMDKITVQMQASGHGAAATGSGRHASYGLAQCYGDLSPADCTLCYIEARNIMPRCYPSNGARVYLEGCFLRAQNYSFYHEYSGPDDGPVCGNRTRDDPGFEESLGKALSRAVLAASGNVRYARAEVAVVGAVNKSIHVLADCWRTIGASACRACLENASASALGC...

XP_057811019.1
MRPNAMIIPMMILLFPFTSFADPRAQVIKLICGKQIEQNATINMANFISTMDKITVQMQASGHGAAATGSGRHASYGLAQCYGDLSPADCTLCYIEARNIMPRCYPSNGARVYLEGCFLRAQNYSFYHEYSGPDDGPVCGNRTRDDPGFEESLGKALSRAVLAASGNVRYARAEVAVVGAVNKSIHVLADCWRTIGASACRACLENASASALGCLPASRGRALNTGCFVEYSDSDFMNPVSRSGSSSVSVIINVIVAVSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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