Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004264`

染色体: Chr05 坐标: 56430975-56436175 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004264`
名称	SmilChr05G004264
描述	uncharacterized SmilChr05G004264
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56430975 - 56436175 / `+`

ID 对照

NCBI Gene ID	`LOC131025316`
GeneID	`131025316`
locus_tag	`-`
NCBI Name	`LOC131025316`
原始查询	`LOC131025316`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	carboxyl-terminal proteinase, putative (DUF239) [Source:NCBI gene (formerly Entrezgene);Acc:838943]; symbol=AT1G23340; hit=AT1G23340; species=arabidopsis; confidence=high
产物	carboxyl-terminal proteinase, putative (DUF239) [Source:NCBI gene (formerly Entrezgene);Acc:838943]; symbol=AT1G23340; hit=AT1G23340; species=arabidopsis; confidence=high
Arabidopsis	`AT1G23340` (AT1G23340) carboxyl-terminal proteinase, putative (DUF239) [Source:NCBI gene (formerly Entrezgene);Acc:838943] identity=72.5; qcov=0.95; evalue=0; confidence=high
Rice	`Os06g0474500` - identity=69; qcov=0.857; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF03080 (Neprosin); PF14365 (Neprosin_AP)
InterPro	-
eggNOG	-
NR	GeneID:131025316

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.40000	`XP_057811027.1`
2	Vacuole	液泡	0.40000	`XP_057811027.1`
3	Cell wall	细胞壁	0.20000	`XP_057811027.1`
4	Nucleus	细胞核	0.00000	`XP_057811027.1`
5	Chromosome	染色体	0.00000	`XP_057811027.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56431317`	`C`	`CA`	1bp_insertion	frameshift_variant	20	A8,B106,B126,B127,B129,B134,B2,B23,B24,B4,B67,B70,B80,B83,B89,C28,C37,C59,C60,C72
`Chr5:56431477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr5:56432082`	`C`	`CAT`	2bp_insertion	frameshift_variant	41	A19,A3,A4,A5,B10,B103,B108,B11,B125,B131,B16,B4,B41,B44,B45,B59,B6,B61,B65,B76,B78,B8,B80,B85,B88,B90,B92,B95,B99,C10,C18,C21,C3,C36,C38,C41,C43,C45,C67,C7,C85
`Chr5:56432092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr5:56432095`	`C`	`CG`	1bp_insertion	frameshift_variant	4	A24,B20,B98,C60
`Chr5:56432095`	`C`	`CG`	1bp_insertion	CDS_variant	4	A24,B20,B98,C60
`Chr5:56432115`	`A`	`ATT`	2bp_insertion	frameshift_variant	12	B16,B41,B59,B6,B65,B78,B8,B80,B85,B95,C38,C67
`Chr5:56432126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B17,B28
`Chr5:56432156`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B51,B52,B82,C48,D6
`Chr5:56432174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr5:56432476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B58,C57
`Chr5:56432543`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B62,B83,B95,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811027.1

441 aa

220

441

Neprosin_AP

Neprosin

PF14365 Neprosin_AP 82-199 aa PF03080 Neprosin 223-434 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811027.1`	Pfam	`PF14365`	Neprosin_AP	Family	82	199	3.3e-38	131.6	Neprosin activation peptide
`XP_057811027.1`	Pfam	`PF03080`	Neprosin	Family	223	434	4e-86	288.5	Neprosin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955044.1
ATATTAATATCCCTCACCCCACATGGCCAAACTTCTAAAAATTCAGAATTCCTATGTTTTCAATTCTTTTACTTATTTATTTCAAATTCCTGTTTCACCTCATGCCTAGAAGTTGTGCATTTGTCAGAATATAAAAGCAAAACCACAGCTCACAAAAACTTGCCAAGAATCAAACACCCAAATCACTCTCAACCTACCTTTTTCCTCTCAAGCTTTGAATCTTGGGAAATTGTGAGATAATAGTTGAGCTGCTTTGCTTT...

CDS

1 records

下载 CDS FASTA

LOC131025316
ATGCCAGAAGAAGACAAAAACCAATGTAGACAGAGACAAAGAGTTGTGTTAGAACAAGAATCAAATCCCTCAAAAATGGCTGCTTCTGCTTCTTCTTCTTCCCCAATCATTCTTCTCTTTGTTTTCTTCCTCTTTTTTATTGCACAATCACAATCACACACTTTCAATGCTACAAATCACAATTCCAAGAAACTCAAACACATTACAGCCCACCTCATGAAAATCAACAAACCTGCTGTCAAGACAATTCTGAGCCCTGA...

Protein

1 records

下载 Protein FASTA

XP_057811027.1
MPEEDKNQCRQRQRVVLEQESNPSKMAASASSSSPIILLFVFFLFFIAQSQSHTFNATNHNSKKLKHITAHLMKINKPAVKTILSPDGDIIDCVLTHQQPAFDHPLLQGQIPMDPPERPKGLHTTTTTTATTTTEDTFPENFQTWTSSGESCPENTIPIRRTSEQDLLRASSVRRFGRKIRRPIRRDSSSNGHEHAVGYVSGDQYYGAKASINVWAPRVANKYEFSLSQMWVIGGSFGDDLNTIEAGWQVSPEIYGDNYP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器