Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004281`

染色体: Chr05 坐标: 56606686-56609506 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004281`
名称	SmilChr05G004281
描述	uncharacterized SmilChr05G004281
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56606686 - 56609506 / `+`

ID 对照

NCBI Gene ID	`LOC131025333`
GeneID	`131025333`
locus_tag	`-`
NCBI Name	`LOC131025333`
原始查询	`LOC131025333`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MAK16 protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838937]; symbol=AT1G23280; hit=AT1G23280; species=arabidopsis; confidence=high
产物	MAK16 protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838937]; symbol=AT1G23280; hit=AT1G23280; species=arabidopsis; confidence=high
Arabidopsis	`AT1G23280` (AT1G23280) MAK16 protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838937] identity=65.6; qcov=1; evalue=6.64e-119; confidence=high
Rice	`Os07g0270900` (OJ1001_C01.111) - identity=77.8; qcov=0.628; evalue=3.09e-110; confidence=high
GO	GO:0000460 (maturation of 5.8S rRNA); GO:0000470 (maturation of LSU-rRNA); GO:0005730 (nucleolus); GO:0030687 (preribosome, large subunit precursor)
KEGG	-
Pfam	PF01778 (Ribosomal_L28e); PF04874 (Mak16)
InterPro	-
eggNOG	-
NR	GeneID:131025333

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811044.1`
2	Chromosome	染色体	1.00000	`XP_057811044.1`
3	Centromere	着丝粒	0.00000	`XP_057811044.1`
4	Chromatin	染色质	0.00000	`XP_057811044.1`
5	Telomere	端粒	0.00000	`XP_057811044.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56607316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:56607394`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:56608718`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:56608852`	`C`	`CA`	1bp_insertion	frameshift_variant	29	A24,A4,A6,B10,B109,B11,B125,B127,B131,B133,B16,B20,B45,B49,B52,B65,B74,B87,B90,B92,B98,C11,C12,C21,C25,C3,C60,C69,D11
`Chr5:56608869`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B136,C70
`Chr5:56608974`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811044.1

307 aa

154

307

Ribosomal_L28e

Mak16

PF01778 Ribosomal_L28e 6-118 aa PF04874 Mak16 138-226 aa

XP_057811045.1

301 aa

150

301

Ribosomal_L28e

Mak16

PF01778 Ribosomal_L28e 6-118 aa PF04874 Mak16 138-226 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811044.1`	Pfam	`PF01778`	Ribosomal_L28e	Family	6	118	3.4e-38	131.5	Ribosomal L28e protein family
`XP_057811044.1`	Pfam	`PF04874`	Mak16	Family	138	226	1.5e-22	80.9	Mak16 protein C-terminal region
`XP_057811045.1`	Pfam	`PF01778`	Ribosomal_L28e	Family	6	118	3.3e-38	131.5	Ribosomal L28e protein family
`XP_057811045.1`	Pfam	`PF04874`	Mak16	Family	138	226	1.4e-22	80.9	Mak16 protein C-terminal region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955062.1
GAAAAGCGCGCTGGATATTCGTTGAAATCGTTCTCACTCTCTTTTACTGTCGGCCCACAGCTGAAGCGTAACCTAAACCCTAATTTTTTTCCCCAATTGTTAAACCCTCGGTCGCCAGCAGCAGCAGAAGGTCGAAGAATCGGACGATTCTTCTCTTCATTTTTACTTATACTAGTTCTGAACGATTTTTCTGAACGATTAGAGACTGTCCGTATAAAGATGCAGCACGATGAGGTCATCTGGCAAGTTATCAGGCACAA...

XM_057955061.1
AAGCGCGCTGGATATTCGTTGAAATCGTTCTCACTCTCTTTTACTGTCGGCCCACAGCTGAAGCGTAACCTAAACCCTAATTTTTTTCCCCAATTGTTAAACCCTCGGTCGCCAGCAGCAGCAGAAGGTCGAAGAATCGGACGATTCTTCTCTTCATTTTTACTTATACTAGTTCTGAACGATTTTTCTGAACGATTAGAGACTGTCCGTATAAAGATGCAGCACGATGAGGTCATCTGGCAAGTTATCAGGCACAAACA...

CDS

2 records

下载 CDS FASTA

LOC131025333
ATGCAGCACGATGAGGTCATCTGGCAAGTTATCAGGCACAAACACTGCAGTTTCATGGCCAAAATTGAAACTGGGATATTTTGTCGGAATCCGTACAATGTAACCGGGATATGCAATCGGAGCTCTTGCCCTCTCGCTAACAGTCGATACGCCACTATACGGGATCATGACGGAGTGTTTTATTTGTATATGAAAACTATAGAAAGGGCGCATATGCCGAATAAATTGTGGGAAAGAGTTAAGTTGCCGAGAAATTATGC...

Protein

2 records

下载 Protein FASTA

XP_057811044.1
MQHDEVIWQVIRHKHCSFMAKIETGIFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHMPNKLWERVKLPRNYAKALEIIDKHMLYWPKLLVHKTKQRLTKMTQMRIRMRKLALKTREKIMTVPTKQKKREARREEKAEKAAVLEKSIEKELLERLKKGVYGDIYNYPVDKYNEILDKEVGKATISEDEEEEEPVIEYVEGYEELEEEDDMEDFGGLAIREDYDNAVTQNADSMNDDDDDDDEEENA...

XP_057811045.1
MQHDEVIWQVIRHKHCSFMAKIETGIFCRNPYNVTGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHMPNKLWERVKLPRNYAKALEIIDKHMLYWPKLLVHKTKQRLTKMTQMRIRMRKLALKTREKIMTVPTKQKKREARREEKAEKAAVLEKSIEKELLERLKKGVYGDIYNYPVDKYNEILDKEVGKATISEDEEEEEPVIEYVEGYEELEEEDDMEDFGGLAIREDYDNDSMNDDDDDDDEEENASVARKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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