Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004292`

染色体: Chr05 坐标: 56674063-56676658 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004292`
名称	SmilChr05G004292
描述	probable protein arginine N-methyltransferase 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56674063 - 56676658 / `-`

ID 对照

NCBI Gene ID	`LOC131025342`
GeneID	`131025342`
locus_tag	`-`
NCBI Name	`LOC131025342`
原始查询	`LOC131025342`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable protein arginine N-methyltransferase 1
产物	probable protein arginine N-methyltransferase 1
Arabidopsis	`AT4G29510` (PRMT11) arginine methyltransferase 11 [Source:NCBI gene (formerly Entrezgene);Acc:829072] identity=76.9; qcov=0.966; evalue=0; confidence=high
Rice	`Os09g0359800` (OsPRMT1) - identity=72.9; qcov=1; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0016274 (protein-arginine N-methyltransferase activity); GO:0018216 (peptidyl-arginine methylation)
KEGG	-
Pfam	PF06325 (PrmA); PF08241 (Methyltransf_11); PF13649 (Methyltransf_25); PF22528 (PRMT_C)
InterPro	-
eggNOG	-
NR	GeneID:131025342

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811054.1`
2	Cytoplasm	细胞质	1.00000	`XP_057811054.1`
3	Nucleoplasm	核质	0.60000	`XP_057811054.1`
4	Cytosol	细胞质基质	0.60000	`XP_057811055.1`
5	Chromosome	染色体	0.00000	`XP_057811054.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56674256`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,B112
`Chr5:56674280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B115
`Chr5:56674333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr5:56674367`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr5:56674566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:56675842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B71,C58,C62,C78,C8
`Chr5:56675852`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr5:56676212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B61,B88,C43
`Chr5:56676272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B61,B88,C43
`Chr5:56676374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B138,B17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811054.1

386 aa

193

386

PrmA

Methyltransf_25

Methyltransf_11

PRMT_C

PF06325 PrmA 102-177 aa PF13649 Methyltransf_25 107-195 aa PF08241 Methyltransf_11 108-206 aa PF22528 PRMT_C 209-373 aa

XP_057811055.1

386 aa

193

386

PrmA

Methyltransf_25

Methyltransf_11

PRMT_C

PF06325 PrmA 102-177 aa PF13649 Methyltransf_25 107-195 aa PF08241 Methyltransf_11 108-206 aa PF22528 PRMT_C 209-373 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811054.1`	Pfam	`PF06325`	PrmA	Family	102	177	5.7e-10	39.9	Ribosomal protein L11 methyltransferase (PrmA)
`XP_057811054.1`	Pfam	`PF13649`	Methyltransf_25	Domain	107	195	1.9e-08	35.6	Methyltransferase domain
`XP_057811054.1`	Pfam	`PF08241`	Methyltransf_11	Domain	108	206	1.3e-07	32.8	Methyltransferase domain
`XP_057811054.1`	Pfam	`PF22528`	PRMT_C	Domain	209	373	3e-59	200.4	Arginine methyltransferase oligomerization subdomain
`XP_057811055.1`	Pfam	`PF06325`	PrmA	Family	102	177	8.5e-10	39.3	Ribosomal protein L11 methyltransferase (PrmA)
`XP_057811055.1`	Pfam	`PF13649`	Methyltransf_25	Domain	107	195	2e-08	35.5	Methyltransferase domain
`XP_057811055.1`	Pfam	`PF08241`	Methyltransf_11	Domain	108	206	1.4e-07	32.8	Methyltransferase domain
`XP_057811055.1`	Pfam	`PF22528`	PRMT_C	Domain	209	373	3.1e-59	200.3	Arginine methyltransferase oligomerization subdomain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955072.1
AGGCGAAAAAGAAAAAGAAAAAAAAAAGCAGAAACGAAAAAAAAAAAAAAAAAGCAGAAAAGAAAAGGAAAGCAGATATTTGGAGAGATTAAATAGAGAAGAGGAACATAAACCCTAATTCTGCTTCCAGCCACTCAATTCTCACACTCCTCCCCCTCTCTAAAACCCTACTTCCCAACCTCCGAAATCCCAACGCCTCAAATTTCGCTTCACTCTTACTTTTCGGATTATCGGAGCAAAACCATGGATGTAGAAAACAA...

XM_057955071.1
ATAGAGAAGAGGAACATAAACCCTAATTCTGCTTCCAGCCACTCAATTCTCACACTCCTCCCCCTCTCTAAAACCCTACTTCCCAACCTCCGAAATCCCAACGCCTCAAATTTCGCTTCACTCTTACTTTTCGGATTATCGGAGCAAAACCATGGATGTAGAAAACAACGTCGATGCGAATGCCAGCGGAAGCTTGGCCGCCACAAAGATCAGGTTCCAATACGATGAGGACGAAGAAGCTGAAACCATCGAGCAAGTAG...

CDS

2 records

下载 CDS FASTA

LOC131025342
ATGGATGTAGAAAACAACGTCGATGCGAATGCCAGCGGAAGCTTGGCCGCCACAAAGATCAGGTTCCAATACGATGAGGACGAAGAAGCTGAAACCATCGAGCAAGTAGCTGCCGAGAGCTCGAATCTTGATGAGGATTCCACCATGTGCGAGCGGGAGGAATCCTTGGTCACTGGGGATGATAAGACCAGCGCTGATTACTACTTCGATTCCTACTCGCACTTTGGCATTCATGAAGAAATGTTGAAGGATGTGATTAG...

Protein

2 records

下载 Protein FASTA

XP_057811054.1
MDVENNVDANASGSLAATKIRFQYDEDEEAETIEQVAAESSNLDEDSTMCEREESLVTGDDKTSADYYFDSYSHFGIHEEMLKDVIRTKTYQNVIYKNSFLFKDKIVLDVGAGTGILSLFCAKVGAKHVYAVECSSMANTAEEIVKLNGYSNVVTVLKGKIEEIELPVAQVDVIISEWMGYFLVYENMLDTVLYARDKWLAKDGIVLPDKASLHLTAIEDADYKEDKIEFWNNVYGFNMSCIRKQAIAEPLVDTVEQNQI...

XP_057811055.1
MDVENNVDANASGSLAATKIRFQYDEDEEAETIEQVAAESSNLDEDSTMCEREESLVTGDDKTSADYYFDSYSHFGNYFEMLKDVIRTKTYQNVIYKNSFLFKDKIVLDVGAGTGILSLFCAKVGAKHVYAVECSSMANTAEEIVKLNGYSNVVTVLKGKIEEIELPVAQVDVIISEWMGYFLVYENMLDTVLYARDKWLAKDGIVLPDKASLHLTAIEDADYKEDKIEFWNNVYGFNMSCIRKQAIAEPLVDTVEQNQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器