Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004296`

染色体: Chr05 坐标: 56685955-56689967 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004296`
名称	SmilChr05G004296
描述	eukaryotic translation initiation factor 4B2-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56685955 - 56689967 / `-`

ID 对照

NCBI Gene ID	`LOC131025346`
GeneID	`131025346`
locus_tag	`-`
NCBI Name	`LOC131025346`
原始查询	`LOC131025346`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	eukaryotic translation initiation factor 4B2-like
产物	eukaryotic translation initiation factor 4B2-like
Arabidopsis	`AT3G26400` (EIF4B1) eukaryotic translation initiation factor 4B1 [Source:NCBI gene (formerly Entrezgene);Acc:822244] identity=45.2; qcov=0.878; evalue=1.05e-88; confidence=high
Rice	`Os02g0595800` - identity=40.5; qcov=0.724; evalue=1.59e-73; confidence=medium
GO	GO:0003729 (mRNA binding); GO:0003743 (translation initiation factor activity)
KEGG	-
Pfam	PF06273 (eIF-4B)
InterPro	-
eggNOG	-
NR	GeneID:131025346

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057811058.1`
2	Cytoplasmic granule	细胞质颗粒	1.00000	`XP_057811058.1`
3	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	1.00000	`XP_057811058.1`
4	P-body	P-body	0.80000	`XP_057811058.1`
5	Stress granule	Stress granule	0.80000	`XP_057811058.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56686666`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,B15
`Chr5:56686801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B11,B13,B27,C40
`Chr5:56686891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr5:56687089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr5:56687116`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,B15
`Chr5:56688763`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr5:56689159`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr5:56689207`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:56689255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B25,B28,B63,B83,D3
`Chr5:56689357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B115,B126,C9,D8
`Chr5:56689368`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B115,B126,C9,D8
`Chr5:56689370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B115,B126,C9,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811058.1

613 aa

306

613

eIF-4B

PF06273 eIF-4B 1-485 aa PF06273 eIF-4B 532-599 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811058.1`	Pfam	`PF06273`	eIF-4B	Family	1	485	5.1e-154	514.7	Plant specific eukaryotic initiation factor 4B
`XP_057811058.1`	Pfam	`PF06273`	eIF-4B	Family	532	599	5.1e-154	514.7	Plant specific eukaryotic initiation factor 4B

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955075.1
ATATTTTCTGAAAATTAATTTCTTGAAATTTCCATGCAATTTTGGTAGTGATTCAGACCGGATCCAGAGTTGCAGAACCGGCCATCTCCACACGAGAAGAGAAGATTTAATCCAAGTTTTTATATATCTCTTTCTCTTTCTATATTTAAACTCGCAGATTTTGGGGGAAACGAGAAAAAAAGGAAATAAATAACTTTCACATTTAATTGCGAGAGATCTTTGGAGAAATGTCGAAATCGCCATGGGGAATCGGCGCATGG...

CDS

1 records

下载 CDS FASTA

LOC131025346
ATGTCGAAATCGCCATGGGGAATCGGCGCATGGGCGGCCGAGGCCGAGAGGGAGGAGGCCGAGCTGAAGGAGGCGGAGGAGAAGGCGGCCGCTGCGGCGGCGGCGGCGCCCGCGGCGAGCTTCCCTAGCCTGAAGGAGGGCGTGAGCACCGCCAAGCAGAAGAAGAAGACCAAGATGACGCTCCAGGAATTCAGGGTCATGCCGTCTCAGGGCCGCGGACTGACGCCGGAGGAAATGCTCCGCCTCCCGACGGGCCCCAA...

Protein

1 records

下载 Protein FASTA

XP_057811058.1
MSKSPWGIGAWAAEAEREEAELKEAEEKAAAAAAAAPAASFPSLKEGVSTAKQKKKTKMTLQEFRVMPSQGRGLTPEEMLRLPTGPKERSPEEMQYGRLGGGFSNYGSRAGSGGPNSGRREYEGRRSYGFEDDGRRGPSQQQSRVSEFDQPSRADEVDNWASMKKQTLPDHDSREPRAAGKYSSLGGSGGGASRADEVDNWASMKKPVSQPLPQQARSSGFGSGFSRPETDRWNRNESFGSGFSKPEADRWTRGEQNPSM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器