Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004298`

染色体: Chr05 坐标: 56695115-56700113 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004298`
名称	SmilChr05G004298
描述	protein-tyrosine-phosphatase MKP1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56695115 - 56700113 / `-`

ID 对照

NCBI Gene ID	`LOC131025349`
GeneID	`131025349`
locus_tag	`-`
NCBI Name	`LOC131025349`
原始查询	`LOC131025349`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein-tyrosine-phosphatase MKP1-like
产物	protein-tyrosine-phosphatase MKP1-like
Arabidopsis	`AT3G23610` (DSPTP1) dual specificity protein phosphatase 1 [Source:NCBI gene (formerly Entrezgene);Acc:821941] identity=35.4; qcov=0.208; evalue=2.76e-24; confidence=weak
Rice	`Os05g0115800` (GSN1) - identity=59.7; qcov=0.611; evalue=0; confidence=high
GO	GO:0006470 (protein dephosphorylation); GO:0008138 (protein tyrosine/serine/threonine phosphatase activity); GO:0051015 (actin filament binding)
KEGG	-
Pfam	PF00626 (Gelsolin); PF00782 (DSPc)
InterPro	-
eggNOG	-
NR	GeneID:131025349

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057811062.1`
2	Cytosol	细胞质基质	1.00000	`XP_057811062.1`
3	Nucleus	细胞核	0.00000	`XP_057811062.1`
4	Chromosome	染色体	0.00000	`XP_057811062.1`
5	Centromere	着丝粒	0.00000	`XP_057811062.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56697225`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr5:56697238`	`G`	`GT`	1bp_insertion	frameshift_variant	6	A5,B23,B67,B80,B91,C4
`Chr5:56697239`	`G`	`GTC`	2bp_insertion	frameshift_variant	6	A5,B23,B67,B80,B91,C4
`Chr5:56697458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,C2,C29,D4,D8
`Chr5:56697505`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,C2,C29,D4,D8
`Chr5:56697509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:56697597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,B133
`Chr5:56697618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,B112
`Chr5:56697627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:56697863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B20,B76,B98,C60
`Chr5:56697900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B102,B110,B41,C28
`Chr5:56697908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811062.1

712 aa

356

712

DSPc

Gelsolin

PF00782 DSPc 122-252 aa PF00626 Gelsolin 291-354 aa

XP_057811063.1

709 aa

354

709

DSPc

Gelsolin

PF00782 DSPc 122-252 aa PF00626 Gelsolin 291-354 aa

XP_057811064.1

707 aa

354

707

DSPc

Gelsolin

PF00782 DSPc 122-252 aa PF00626 Gelsolin 291-354 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811062.1`	Pfam	`PF00782`	DSPc	Domain	122	252	4.5e-27	95.2	Dual specificity phosphatase, catalytic domain
`XP_057811062.1`	Pfam	`PF00626`	Gelsolin	Domain	291	354	5.6e-06	26.8	Gelsolin repeat
`XP_057811063.1`	Pfam	`PF00782`	DSPc	Domain	122	252	4.5e-27	95.2	Dual specificity phosphatase, catalytic domain
`XP_057811063.1`	Pfam	`PF00626`	Gelsolin	Domain	291	354	5.6e-06	26.8	Gelsolin repeat
`XP_057811064.1`	Pfam	`PF00782`	DSPc	Domain	122	252	4.5e-27	95.2	Dual specificity phosphatase, catalytic domain
`XP_057811064.1`	Pfam	`PF00626`	Gelsolin	Domain	291	354	5.6e-06	26.8	Gelsolin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XR_009102154.1
CTGTAATCTTCTCTCTTTCTCTGGCTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCAATCGCTCTCTCTCTCTTGAAAAACAGCAACCCTTTGTTGAACGGATCTTTTATAATTTTGTCCCTTTTTAATTTTAATAATAACAATAAGAAAAAAAATTCCCCCTTTCTCACTTCGCAGTAATCAAATGTCTGCTGCTCATGCCCAACGACCAATTCACTAGTTCATAGTGGCAGCTTAGATTTTGAAATGTT...

XR_009102152.1
CTGTAATCTTCTCTCTTTCTCTGGCTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCAATCGCTCTCTCTCTCTTGAAAAACAGCAACCCTTTGTTGAACGGATCTTTTATAATTTTGTCCCTTTTTAATTTTAATAATAACAATAAGAAAAAAAATTCCCCCTTTCTCACTTCGCAGTAATCAAATGTCTGCTGCTCATGCCCAACGACCAATTCACTAGTTCATAGTGGCAGCTTAGATTTTGAAATGTT...

CDS

3 records

下载 CDS FASTA

LOC131025349
ATGTTAAGGGAAGAAGAGAAAGATCAAGGATCCAGTGTTGGTTGGAAGACATTCTCGAGGTCGGTGTCGTGGACTGAACGCCCACCAAGGAAATCTAATTCAAATCCGCAATGGAACAGCAAGGCGCGGGCGTGTTTGCCGCCCCTTCAGCCTCTTTCTATCGTCCGACCAAGCATTGAAGAATGGCCGAGAGCTGGGTCAGATGATCTTGGCGTATGGCCTAATCCTCCAACTCCTGGTGAAAGGCCTGGATCAAAAAC...

Protein

3 records

下载 Protein FASTA

XP_057811062.1
MLREEEKDQGSSVGWKTFSRSVSWTERPPRKSNSNPQWNSKARACLPPLQPLSIVRPSIEEWPRAGSDDLGVWPNPPTPGERPGSKTPRGTSTSELPPREFECRKDKLAFFDKECSRILDHIYLGGDAIAKNREILRQRKITHVLNCVGFVCPEYFSNELEYKTLWLQDSPSEDITSILYDVFDYFEDIREQGGRVLVHCCHGVSRSTSLVIAYLMWKEGQSFDDAFQHVKAARGVTNPNVGFACQLLQCQKRVHALPAS...

XP_057811063.1
MLREEEKDQGSSVGWKTFSRSVSWTERPPRKSNSNPQWNSKARACLPPLQPLSIVRPSIEEWPRAGSDDLGVWPNPPTPGERPGSKTPRGTSTSELPPREFECRKDKLAFFDKECSRILDHIYLGGDAIAKNREILRQRKITHVLNCVGFVCPEYFSNELEYKTLWLQDSPSEDITSILYDVFDYFEDIREQGGRVLVHCCHGVSRSTSLVIAYLMWKEGQSFDDAFQHVKAARGVTNPNVGFACQLLQCQKRVHALPAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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