当前解析结果
SmilChr05G004305| 统一新 Gene ID | SmilChr05G004305 |
|---|---|
| 名称 | SmilChr05G004305 |
| 描述 | ABC transporter B family member 15-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 56760473 - 56765492 / - |
| NCBI Gene ID | LOC131025356 |
|---|---|
| GeneID | 131025356 |
| locus_tag | - |
| NCBI Name | LOC131025356 |
| 原始查询 | LOC131025356 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 15-like |
| 产物 | ABC transporter B family member 15-like |
| Arabidopsis | AT3G28345 (ABCB15)ABC transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:822463] identity=50.5; qcov=0.999; evalue=0; confidence=high |
| Rice | Os02g0190300 (OsABCB9)- identity=50.8; qcov=0.994; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025356 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057811072.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057811072.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057811072.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057811072.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811072.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:56760533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr5:56760586 |
TC |
T |
1bp_deletion | frameshift_variant | 10 | A18,B126,B22,B33,B40,B89,B95,C39,C49,C63 |
Chr5:56760621 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr5:56760649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:56760659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr5:56760687 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B103,B91,C24,C41,C45 |
Chr5:56760733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B2,B99,C43,C8 |
Chr5:56760735 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B88 |
Chr5:56760735 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr5:56760739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B107,B138,C55 |
Chr5:56760778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B138,C45,C55 |
Chr5:56760898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057811072.1PF00664
ABC_membrane 16-281 aa
PF00005
ABC_tran 359-507 aa
PF00664
ABC_membrane 678-948 aa
PF00005
ABC_tran 1017-1166 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811072.1 |
Pfam | PF00664 |
ABC_membrane | Family | 16 | 281 | 8e-85 | 285.6 | ABC transporter transmembrane region |
XP_057811072.1 |
Pfam | PF00005 |
ABC_tran | Domain | 359 | 507 | 4.6e-70 | 235.3 | ABC transporter |
XP_057811072.1 |
Pfam | PF00664 |
ABC_membrane | Family | 678 | 948 | 8e-85 | 285.6 | ABC transporter transmembrane region |
XP_057811072.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1017 | 1166 | 4.6e-70 | 235.3 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。