Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004336`

染色体: Chr05 坐标: 57032527-57035557 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004336`
名称	SmilChr05G004336
描述	glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	57032527 - 57035557 / `+`

ID 对照

NCBI Gene ID	`LOC131025385`
GeneID	`131025385`
locus_tag	`-`
NCBI Name	`LOC131025385`
原始查询	`LOC131025385`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like
产物	glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic-like
Arabidopsis	`AT1G13440` (GAPC2) glyceraldehyde-3-phosphate dehydrogenase C2 [Source:NCBI gene (formerly Entrezgene);Acc:837904] identity=89.8; qcov=0.985; evalue=0; confidence=high
Rice	`Os04g0486600` (GAPDH) - identity=91.9; qcov=0.988; evalue=0; confidence=high
GO	GO:0006006 (glucose metabolic process); GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor); GO:0050661 (NADP binding); GO:0051287 (NAD binding)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00044 (Gp_dh_N); PF02800 (Gp_dh_C)
InterPro	-
eggNOG	-
NR	GeneID:131025385

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057811102.1`
2	Cytosol	细胞质基质	1.00000	`XP_057811102.1`
3	Nucleus	细胞核	0.00000	`XP_057811102.1`
4	Chromosome	染色体	0.00000	`XP_057811102.1`
5	Centromere	着丝粒	0.00000	`XP_057811102.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:57033021`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B24
`Chr5:57033021`	`AT`	`A`	1bp_deletion	CDS_variant	1	B24
`Chr5:57033484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,C71
`Chr5:57034300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr5:57034330`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B40
`Chr5:57034330`	`AC`	`A`	1bp_deletion	CDS_variant	1	B40
`Chr5:57034332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr5:57034545`	`C`	`CTG`	2bp_insertion	frameshift_variant	1	B55
`Chr5:57034545`	`C`	`CTG`	2bp_insertion	CDS_variant	1	B55
`Chr5:57034602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C71,D7
`Chr5:57034962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B103,B104,B83,B88,C84
`Chr5:57035117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811102.1

337 aa

168

337

Gp_dh_N

Gp_dh_C

PF00044 Gp_dh_N 4-107 aa PF02800 Gp_dh_C 153-318 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811102.1`	Pfam	`PF00044`	Gp_dh_N	Domain	4	107	1.3e-35	122.4	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
`XP_057811102.1`	Pfam	`PF02800`	Gp_dh_C	Domain	153	318	2.1e-75	252.8	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955119.1
AGCTCATTAAAACATGGCCACAAAACATGTGTCCTAACCTCCAAATAATAGCTGTCACAAAATTTTATTTCCGGGTCAAATTTCTCTTCATTTTTTTCTTTTTACACCATTAGTATAACATAGTAGTATAAAAAATTGTGTCACTGGAAAAATAAATCTAGAATTTTCTTTAACCAGACAATTATTTATAAGAGGTGATTGCAAAAGTAAATGGAAAATTCCGACTTGTTTTCCAAGAATTAAATTGGAAATTTGTGTAG...

CDS

1 records

下载 CDS FASTA

LOC131025385
ATGGGGAAGATCAAGATTGGGATTAATGGATTTGGGAGGATTGGTCGCTTGGTTGCAAGAGTTGCTCTGCAAAGGGACGATGTTGAGCTCGTTGCTGTGAATGATCCATTTATCAGCACTGACTACATGACATACATGTTCAAGTATGATAGTGTGCATGGTCAATGGAAGCATCATGAAGTTAAGGTGAAGGATGAAAAAACCCTTCTTTTTGGTGAAAAATCAGTCAAAGTATTCGGGTGCAGGAATCCTGAGGAGAT...

Protein

1 records

下载 Protein FASTA

XP_057811102.1
MGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHHEVKVKDEKTLLFGEKSVKVFGCRNPEEIPWGEAGAEFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYTPELNIVSNASCTTNCLAPLAKVINDKFGIVEGLMSTIHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYDEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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