当前解析结果
SmilChr05G004337| 统一新 Gene ID | SmilChr05G004337 |
|---|---|
| 名称 | SmilChr05G004337 |
| 描述 | uncharacterized SmilChr05G004337 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 57037114 - 57039932 / + |
| NCBI Gene ID | LOC131025387 |
|---|---|
| GeneID | 131025387 |
| locus_tag | - |
| NCBI Name | LOC131025387 |
| 原始查询 | LOC131025387 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0601700; species=rice; confidence=high |
| 产物 | hit=Os02g0601700; species=rice; confidence=high |
| Arabidopsis | AT3G01750 (AT3G01750)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821087] identity=46.1; qcov=1.04; evalue=2.81e-178; confidence=high |
| Rice | Os02g0601700- identity=45.1; qcov=1.12; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13857 (Ank_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025387 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057811105.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057811105.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057811105.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811105.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811105.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:57037707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B94,D2 |
Chr5:57037723 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr5:57037945 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr5:57037948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr5:57037998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr5:57038017 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr5:57038551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr5:57038573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C69,C71 |
Chr5:57038587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:57038609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr5:57038615 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr5:57038619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811105.1PF12796
Ank_2 140-230 aa
PF12796
Ank_2 180-263 aa
PF00023
Ank 209-233 aa
PF12796
Ank_2 236-285 aa
PF00023
Ank 242-266 aa
PF13857
Ank_5 315-365 aa
PF00023
Ank 323-356 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811105.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 140 | 230 | 2.2e-32 | 112.2 | Ankyrin repeats (3 copies) |
XP_057811105.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 180 | 263 | 2.2e-32 | 112.2 | Ankyrin repeats (3 copies) |
XP_057811105.1 |
Pfam | PF00023 |
Ank | Repeat | 209 | 233 | 1.2e-23 | 82.6 | Ankyrin repeat |
XP_057811105.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 236 | 285 | 2.2e-32 | 112.2 | Ankyrin repeats (3 copies) |
XP_057811105.1 |
Pfam | PF00023 |
Ank | Repeat | 242 | 266 | 1.2e-23 | 82.6 | Ankyrin repeat |
XP_057811105.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 315 | 365 | 7e-22 | 78.0 | Ankyrin repeats (many copies) |
XP_057811105.1 |
Pfam | PF00023 |
Ank | Repeat | 323 | 356 | 1.2e-23 | 82.6 | Ankyrin repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。