Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004349`

染色体: Chr05 坐标: 57103791-57107469 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004349`
名称	SmilChr05G004349
描述	uncharacterized SmilChr05G004349
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	57103791 - 57107469 / `-`

ID 对照

NCBI Gene ID	`LOC131025399`
GeneID	`131025399`
locus_tag	`-`
NCBI Name	`LOC131025399`
原始查询	`LOC131025399`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin [Source:NCBI gene (formerly Entrezgene);Acc:831273]; symbol=AT5G14230; hit=AT5G14230; species=arabidopsis; confidence=high
产物	ankyrin [Source:NCBI gene (formerly Entrezgene);Acc:831273]; symbol=AT5G14230; hit=AT5G14230; species=arabidopsis; confidence=high
Arabidopsis	`AT5G14230` (AT5G14230) ankyrin [Source:NCBI gene (formerly Entrezgene);Acc:831273] identity=55.8; qcov=0.982; evalue=0; confidence=high
Rice	`Os02g0457500` - identity=44.1; qcov=0.929; evalue=9.75e-179; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:131025399

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057811123.1`
2	Cytoplasm	细胞质	0.80000	`XP_057811123.1`
3	Nucleus	细胞核	0.20000	`XP_057811123.1`
4	Chromosome	染色体	0.00000	`XP_057811123.1`
5	Centromere	着丝粒	0.00000	`XP_057811123.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:57104061`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,C24,C46
`Chr5:57104192`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,C14
`Chr5:57104255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B4,B5,B76,B89
`Chr5:57104292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B4,B5,B76,B89
`Chr5:57104542`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr5:57104606`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr5:57104664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B55,C38
`Chr5:57104727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B6,C67
`Chr5:57104821`	`G`	`GAA`	2bp_insertion	frameshift_variant	49	A13,A19,A21,A7,B110,B114,B115,B123,B125,B129,B134,B135,B139,B23,B31,B34,B38,B39,B4,B5,B56,B57,B60,B61,B62,B65,B71,B83,B84,B87,B88,B9,B96,C14,C22,C28,C30,C33,C39,C58,C59,C61,C62,C75,C80,C84,C9,D11,D4
`Chr5:57104824`	`CGT`	`C`	2bp_deletion	frameshift_variant	48	A13,A19,A21,A7,B110,B114,B115,B123,B125,B129,B134,B135,B139,B23,B31,B34,B38,B39,B4,B56,B57,B60,B61,B62,B65,B71,B83,B84,B87,B88,B9,B96,C14,C22,C28,C30,C33,C39,C58,C59,C61,C62,C75,C80,C84,C9,D11,D4
`Chr5:57104873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,B69
`Chr5:57104990`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B108

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811123.1

761 aa

380

761

Ank_2

Ank

Ank_2

Ank

Ank_2

Ank_4

Ank_2

Ank_4

Ank_5

Ank

Ank_4

Ank_2

Ank_3

Ank

PF12796 Ank_2 101-155 aa PF00023 Ank 102-129 aa PF12796 Ank_2 104-182 aa PF00023 Ank 324-350 aa PF00023 Ank 365-392 aa PF12796 Ank_2 367-435 aa PF13637 Ank_4 377-413 aa PF12796 Ank_2 470-552 aa PF13637 Ank_4 472-519 aa PF13857 Ank_5 484-539 aa PF00023 Ank 499-530 aa PF00023 Ank 564-590 aa PF13637 Ank_4 564-613 aa PF12796 Ank_2 564-633 aa PF13606 Ank_3 592-620 aa PF00023 Ank 592-623 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811123.1`	Pfam	`PF12796`	Ank_2	Repeat	101	155	2.2e-53	179.5	Ankyrin repeats (3 copies)
`XP_057811123.1`	Pfam	`PF00023`	Ank	Repeat	102	129	7.4e-43	142.9	Ankyrin repeat
`XP_057811123.1`	Pfam	`PF12796`	Ank_2	Repeat	104	182	2.2e-53	179.5	Ankyrin repeats (3 copies)
`XP_057811123.1`	Pfam	`PF00023`	Ank	Repeat	324	350	7.4e-43	142.9	Ankyrin repeat
`XP_057811123.1`	Pfam	`PF00023`	Ank	Repeat	365	392	7.4e-43	142.9	Ankyrin repeat
`XP_057811123.1`	Pfam	`PF12796`	Ank_2	Repeat	367	435	2.2e-53	179.5	Ankyrin repeats (3 copies)
`XP_057811123.1`	Pfam	`PF13637`	Ank_4	Repeat	377	413	1.5e-36	124.3	Ankyrin repeats (many copies)
`XP_057811123.1`	Pfam	`PF12796`	Ank_2	Repeat	470	552	2.2e-53	179.5	Ankyrin repeats (3 copies)
`XP_057811123.1`	Pfam	`PF13637`	Ank_4	Repeat	472	519	1.5e-36	124.3	Ankyrin repeats (many copies)
`XP_057811123.1`	Pfam	`PF13857`	Ank_5	Repeat	484	539	1.4e-26	92.9	Ankyrin repeats (many copies)
`XP_057811123.1`	Pfam	`PF00023`	Ank	Repeat	499	530	7.4e-43	142.9	Ankyrin repeat
`XP_057811123.1`	Pfam	`PF00023`	Ank	Repeat	564	590	7.4e-43	142.9	Ankyrin repeat
`XP_057811123.1`	Pfam	`PF13637`	Ank_4	Repeat	564	613	1.5e-36	124.3	Ankyrin repeats (many copies)
`XP_057811123.1`	Pfam	`PF12796`	Ank_2	Repeat	564	633	2.2e-53	179.5	Ankyrin repeats (3 copies)
`XP_057811123.1`	Pfam	`PF13606`	Ank_3	Repeat	592	620	5.2e-32	106.6	Ankyrin repeat
`XP_057811123.1`	Pfam	`PF00023`	Ank	Repeat	592	623	7.4e-43	142.9	Ankyrin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955140.1
ATCCTCCTCTTTCACACTCCAAACTCCAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACATCCTTGAGCTTCTCTCTGTTTCTCCACAATCCAACATTCTGCAGTCGGAGCAAAATCACCATATTCTGAAGCTCGTGCGCTAAAAAAGAGCAGAAATGACTGAAGTATTCACCAGCACCGCCGGCGGTGGAGGCCAGTACTTGATCGGAAAGAAACAACAGATTTTTCCGGT...

CDS

1 records

下载 CDS FASTA

LOC131025399
ATGACTGAAGTATTCACCAGCACCGCCGGCGGTGGAGGCCAGTACTTGATCGGAAAGAAACAACAGATTTTTCCGGTGACGAGACTTCGCGCTGAATACGACGACGAGCCTGTTTCTCAGCGGCTAGTCATTGCGACTCAATCCGACGATCTCCGCCGAGCTTCCGAGCTCGTTTCTCATCCATCCGTCGACGTTAATTTCATCGGAACAGTTTGCCTGAAATCCAGAAAAACAGAGGTCGTGTTGAACGGCGAATCGGC...

Protein

1 records

下载 Protein FASTA

XP_057811123.1
MTEVFTSTAGGGGQYLIGKKQQIFPVTRLRAEYDDEPVSQRLVIATQSDDLRRASELVSHPSVDVNFIGTVCLKSRKTEVVLNGESASEVRVEFEEFRTDVTALFLAAHNGNLALVKKLLSVGANVNQKLFRGYATTAAVREGHIEVLKILLNGGAAQAACEEALLEACNLGRARAAELLMASDMIRPHVAVHALVVASSRGFVDSVAALIKNGADANANTRMLLQSSKPSLHANVDCNALAAAVVSRQTSVVQLLLNMG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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