Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004353`

染色体: Chr05 坐标: 57133599-57138720 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004353`
名称	SmilChr05G004353
描述	uncharacterized SmilChr05G004353
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	57133599 - 57138720 / `+`

ID 对照

NCBI Gene ID	`LOC131025404`
GeneID	`131025404`
locus_tag	`-`
NCBI Name	`LOC131025404`
原始查询	`LOC131025404`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	EEIG1/EHBP1 protein amino-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:821073]; symbol=AT3G01810; hit=AT3G01810; species=arabidopsis; confidence=medium
产物	EEIG1/EHBP1 protein amino-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:821073]; symbol=AT3G01810; hit=AT3G01810; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G01810` (AT3G01810) EEIG1/EHBP1 protein amino-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:821073] identity=53.4; qcov=0.514; evalue=4.23e-170; confidence=medium
Rice	`Os12g0236100` - identity=52; qcov=0.505; evalue=1.41e-160; confidence=medium
GO	GO:0005643 (nuclear pore)
KEGG	-
Pfam	PF10358 (NT-C2)
InterPro	-
eggNOG	-
NR	GeneID:131025404

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057811127.1`
2	Nucleus	细胞核	0.00000	`XP_057811127.1`
3	Chromosome	染色体	0.00000	`XP_057811127.1`
4	Centromere	着丝粒	0.00000	`XP_057811127.1`
5	Chromatin	染色质	0.00000	`XP_057811127.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:57134466`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:57134668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,B5
`Chr5:57134797`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr5:57135086`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B102,B22,B51
`Chr5:57135401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B77
`Chr5:57135405`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr5:57135481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr5:57135668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C60,D11
`Chr5:57135921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,C19
`Chr5:57135982`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B30,B77,C17
`Chr5:57135998`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:57136087`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811127.1

1006 aa

503

1006

NT-C2

PF10358 NT-C2 14-154 aa

XP_057811128.1

1006 aa

503

1006

NT-C2

PF10358 NT-C2 14-154 aa

XP_057811129.1

1006 aa

503

1006

NT-C2

PF10358 NT-C2 14-154 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811127.1`	Pfam	`PF10358`	NT-C2	Domain	14	154	3.4e-12	47.0	N-terminal C2 in EEIG1 and EHBP1 proteins
`XP_057811128.1`	Pfam	`PF10358`	NT-C2	Domain	14	154	3.4e-12	47.0	N-terminal C2 in EEIG1 and EHBP1 proteins
`XP_057811129.1`	Pfam	`PF10358`	NT-C2	Domain	14	154	3.4e-12	47.0	N-terminal C2 in EEIG1 and EHBP1 proteins

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057955144.1
AGGTAACTTATGTTCGTTTTCATTTATTAAAACCAAATTCAAAGTTTAGATTAATGTAGTCAGATCCATTTGTTACTATATTTTAGCTAGGAACAGTAGTACTTTTTAACTAATAAACCGGATCAACTCCAAAATAAATAAAAAATAAAATAAAAGAACCAAAAAAATCGGATCTTAACTTTGATTTAGAGCGTCGACATAAAATTCCAAAATGATAACTTAGTTTTCAATAAAACGAATATCATTCATTTTTTATTTTA...

XM_057955145.1
TAGTTTTCAATAAAACGAATATCATTCATTTTTTATTTTATTTTATTGTGAGATTAGTTAACTTAGATTTGTCAAGAACTCCAGTGAAAGGGAAGCTCAAATCAGTGGACTTCTGAGCTCGCTGCTTCTCTCTCTCTTGAACAGTCATTTTCTCTCTCTTACTTTCTCTGCAATCAAAAGGAATGGCGTCTGCAGACAATGAGATAAAGAACTACTGGTGAAAACGATTGGAGAAAGCGGAGCTCTGTTTACTATTGACT...

CDS

3 records

下载 CDS FASTA

LOC131025404
ATGGTTCTCGGGCTTAGGTCGAAGCACCGGAGAGGGGCTTCGGTTAAGGTAGAGTACATTGTCCATGTACAGGAGATAAGGCCTTGGCCTCCATCAGAAACCCTAAGATCTGTCCAGAAAGTGTTGCTTCAATGGGAAAATGGTAGTCAGTATTCGGGGTCGTTTCTTGCTGCTGCTCAAAATTCCAAAATCGTGTTCAACGAGTCTTTCAAACTCCCGTTGATTCTTTACCTTGACAAGAAGGCTCATGACAAGTTTCA...

Protein

3 records

下载 Protein FASTA

XP_057811127.1
MVLGLRSKHRRGASVKVEYIVHVQEIRPWPPSETLRSVQKVLLQWENGSQYSGSFLAAAQNSKIVFNESFKLPLILYLDKKAHDKFQKNNLEFSLFVPRKDRAKGQLLGTAVLNLADHGVIDSLLSINVPLSLKRSSNSSVQPSLVIGLEPVEKGSSNSSPSVGLSKQTSLDNDNDDLEIASITDDDASSQSSRTAGSSTFEVGTSSPSQSEKNGYGHAGYDSEKKRNGRIPSTDTPSETWKQENDSDSLYKIRERSMTS...

XP_057811128.1
MVLGLRSKHRRGASVKVEYIVHVQEIRPWPPSETLRSVQKVLLQWENGSQYSGSFLAAAQNSKIVFNESFKLPLILYLDKKAHDKFQKNNLEFSLFVPRKDRAKGQLLGTAVLNLADHGVIDSLLSINVPLSLKRSSNSSVQPSLVIGLEPVEKGSSNSSPSVGLSKQTSLDNDNDDLEIASITDDDASSQSSRTAGSSTFEVGTSSPSQSEKNGYGHAGYDSEKKRNGRIPSTDTPSETWKQENDSDSLYKIRERSMTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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