当前解析结果
SmilChr05G004357| 统一新 Gene ID | SmilChr05G004357 |
|---|---|
| 名称 | SmilChr05G004357 |
| 描述 | pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 57150723 - 57159085 / + |
| NCBI Gene ID | LOC131025408 |
|---|---|
| GeneID | 131025408 |
| locus_tag | - |
| NCBI Name | LOC131025408 |
| 原始查询 | LOC131025408 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 |
| 产物 | pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 |
| Arabidopsis | AT5G13010 (EMB3011)RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831141] identity=73.9; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0508000 (OJ1163_G04.102)- identity=73.8; qcov=1; evalue=0; confidence=high |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005622 (intracellular anatomical structure); GO:0005681 (spliceosomal complex) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF04408 (WHD_HA2); PF07717 (OB_NTP_bind); PF13401 (AAA_22); PF21010 (HA2_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025408 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811137.1 |
| 2 | Nuclear speckle | 核斑点 | 0.20000 | XP_057811137.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057811137.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811137.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811137.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:57152297 |
C |
T |
EMS_canonical_SNV | stop_gained | 11 | A14,A19,A7,B126,B20,B33,B40,B51,B66,C8,D4 |
Chr5:57152314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr5:57152367 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr5:57152369 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr5:57152379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr5:57152713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,C42 |
Chr5:57153309 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,B3 |
Chr5:57154028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr5:57154312 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,B97 |
Chr5:57155438 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr5:57155458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B20,B40,B98,C60 |
Chr5:57155762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811137.1PF00270
DEAD 602-752 aa
PF13401
AAA_22 608-741 aa
PF00271
Helicase_C 798-925 aa
PF04408
WHD_HA2 990-1015 aa
PF21010
HA2_C 1016-1075 aa
PF07717
OB_NTP_bind 1133-1210 aa
XP_057811138.1PF00270
DEAD 600-750 aa
PF13401
AAA_22 606-739 aa
PF00271
Helicase_C 796-923 aa
PF04408
WHD_HA2 988-1013 aa
PF21010
HA2_C 1014-1073 aa
PF07717
OB_NTP_bind 1131-1208 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811137.1 |
Pfam | PF00270 |
DEAD | Domain | 602 | 752 | 3.8e-09 | 37.2 | DEAD/DEAH box helicase |
XP_057811137.1 |
Pfam | PF13401 |
AAA_22 | Domain | 608 | 741 | 7.9e-07 | 30.2 | AAA domain |
XP_057811137.1 |
Pfam | PF00271 |
Helicase_C | Domain | 798 | 925 | 2.1e-11 | 44.8 | Helicase conserved C-terminal domain |
XP_057811137.1 |
Pfam | PF04408 |
WHD_HA2 | Domain | 990 | 1015 | 3.6e-08 | 34.0 | Helicase associated domain (HA2), winged-helix |
XP_057811137.1 |
Pfam | PF21010 |
HA2_C | Domain | 1016 | 1075 | 1.4e-15 | 58.2 | Helicase associated domain (HA2), ratchet-like |
XP_057811137.1 |
Pfam | PF07717 |
OB_NTP_bind | Domain | 1133 | 1210 | 8.7e-18 | 65.0 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
XP_057811138.1 |
Pfam | PF00270 |
DEAD | Domain | 600 | 750 | 3.8e-09 | 37.2 | DEAD/DEAH box helicase |
XP_057811138.1 |
Pfam | PF13401 |
AAA_22 | Domain | 606 | 739 | 7.9e-07 | 30.2 | AAA domain |
XP_057811138.1 |
Pfam | PF00271 |
Helicase_C | Domain | 796 | 923 | 2.1e-11 | 44.8 | Helicase conserved C-terminal domain |
XP_057811138.1 |
Pfam | PF04408 |
WHD_HA2 | Domain | 988 | 1013 | 3.6e-08 | 34.0 | Helicase associated domain (HA2), winged-helix |
XP_057811138.1 |
Pfam | PF21010 |
HA2_C | Domain | 1014 | 1073 | 1.4e-15 | 58.2 | Helicase associated domain (HA2), ratchet-like |
XP_057811138.1 |
Pfam | PF07717 |
OB_NTP_bind | Domain | 1131 | 1208 | 8.7e-18 | 65.0 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。