Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004358`

染色体: Chr05 坐标: 57161184-57165169 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004358`
名称	SmilChr05G004358
描述	(3S,6E)-nerolidol synthase 1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	57161184 - 57165169 / `+`

ID 对照

NCBI Gene ID	`LOC131025409`
GeneID	`131025409`
locus_tag	`-`
NCBI Name	`LOC131025409`
原始查询	`LOC131025409`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	(3S,6E)-nerolidol synthase 1-like
产物	(3S%2C6E)-nerolidol synthase 1-like
Arabidopsis	`AT1G61680` (TPS14) terpene synthase 14 [Source:NCBI gene (formerly Entrezgene);Acc:842465] identity=39.8; qcov=0.826; evalue=2.16e-117; confidence=medium
Rice	`Os02g0121700` (OsTPS3) - identity=34; qcov=0.91; evalue=3.63e-94; confidence=low
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity)
KEGG	smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131025409

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057811140.1`
2	Chloroplast stroma	叶绿体基质	0.20000	`XP_057811140.1`
3	Nucleus	细胞核	0.00000	`XP_057811140.1`
4	Chromosome	染色体	0.00000	`XP_057811140.1`
5	Centromere	着丝粒	0.00000	`XP_057811140.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:57161586`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A4,B53,B75,C76,C9
`Chr5:57162756`	`TG`	`T`	1bp_deletion	frameshift_variant	6	A4,B53,B75,C30,C76,C9
`Chr5:57162771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,B68
`Chr5:57162787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,B68
`Chr5:57163467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B129,B20,B40,B98,C60
`Chr5:57163788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B47,B95
`Chr5:57163806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B41,B6,B9,C67
`Chr5:57163817`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C38,C51
`Chr5:57164184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr5:57164200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C38,C51
`Chr5:57164222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr5:57164360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,C53,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811140.1

579 aa

290

579

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 59-220 aa PF03936 Terpene_synth_C 287-524 aa PF19086 Terpene_syn_C_2 326-524 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811140.1`	Pfam	`PF01397`	Terpene_synth	Repeat	59	220	4.2e-37	128.4	Terpene synthase, N-terminal domain
`XP_057811140.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	287	524	4.4e-63	213.5	Terpene synthase family, metal binding domain
`XP_057811140.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	326	524	1.4e-41	143.2	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955157.1
TGTAAATCTAAAAGTTAAAATGAGAATCTGCAATTTCTCGTCAATTTCTTCATACCATTGTTCCTTTACAACATCGCGAAAAAGGTTTGCAATAACGAATCCAAATAGGATTGGAGCATCATGCACTACTACAACTCATCACAAATGGAACGTCTCCAAAGATCTTACATCAAATTTGGAGGGACACAACTCTTCGGAGAAGTTGTGGGTGGACTACAAGGAAAAAATGGGAGAGATTAAGCAACTATTATTGCAACATT...

CDS

1 records

下载 CDS FASTA

LOC131025409
ATGAGAATCTGCAATTTCTCGTCAATTTCTTCATACCATTGTTCCTTTACAACATCGCGAAAAAGGTTTGCAATAACGAATCCAAATAGGATTGGAGCATCATGCACTACTACAACTCATCACAAATGGAACGTCTCCAAAGATCTTACATCAAATTTGGAGGGACACAACTCTTCGGAGAAGTTGTGGGTGGACTACAAGGAAAAAATGGGAGAGATTAAGCAACTATTATTGCAACATTCGAATCTTGATGAAGAGAT...

Protein

1 records

下载 Protein FASTA

XP_057811140.1
MRICNFSSISSYHCSFTTSRKRFAITNPNRIGASCTTTTHHKWNVSKDLTSNLEGHNSSEKLWVDYKEKMGEIKQLLLQHSNLDEEMNGKESLILVDAIQRVGMEHHFDEEIEMILGRLYYSTNNFDFIHHDLYYVSLHFRLLRNQGYYVPPDALSVFKADDGKFKEKLRQDIGGLMELHEAAQLGLRDEVIIDEVEEFSRLNLNKWLEKMNDDDLHKMVVKNSLRQPQHKNIARLTARNYIEGVCVKGCKKGWEKTLFE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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