Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004370`

染色体: Chr05 坐标: 57213480-57215560 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004370`
名称	SmilChr05G004370
描述	F-box protein At1g67340-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	57213480 - 57215560 / `-`

ID 对照

NCBI Gene ID	`LOC131025419`
GeneID	`131025419`
locus_tag	`-`
NCBI Name	`LOC131025419`
原始查询	`LOC131025419`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box protein At1g67340-like
产物	F-box protein At1g67340-like
Arabidopsis	`AT1G67340` (AT1G67340) HCP-like superfamily protein with MYND-type zinc finger [Source:NCBI gene (formerly Entrezgene);Acc:843055] identity=71.1; qcov=0.865; evalue=2.65e-170; confidence=high
Rice	`Os01g0921800` (OsFbox052) - identity=62.6; qcov=0.847; evalue=1.78e-120; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01753 (zf-MYND); PF23310 (TPR_27)
InterPro	-
eggNOG	-
NR	GeneID:131025419

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811152.1`
2	Chromosome	染色体	0.00000	`XP_057811152.1`
3	Centromere	着丝粒	0.00000	`XP_057811152.1`
4	Chromatin	染色质	0.00000	`XP_057811152.1`
5	Telomere	端粒	0.00000	`XP_057811152.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:57214003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C27,C47
`Chr5:57214022`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A8,B125,B139,B31
`Chr5:57214073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,C27,C47
`Chr5:57214124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:57214142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B23,B51,B52,B62,C19
`Chr5:57214156`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr5:57214336`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr5:57214343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B33,B40,B44,C63
`Chr5:57214352`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,B94,C61
`Chr5:57214717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,D10
`Chr5:57215299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr5:57215331`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,C27,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811152.1

392 aa

196

392

TPR_27

zf-MYND

PF23310 TPR_27 113-182 aa PF01753 zf-MYND 316-355 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811152.1`	Pfam	`PF23310`	TPR_27	Repeat	113	182	2.4e-12	47.2	Plant tetratrico peptide repeats
`XP_057811152.1`	Pfam	`PF01753`	zf-MYND	Domain	316	355	1.8e-08	35.0	MYND finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955169.1
ATTATATATATAAAGGGGGATGTTTCATTTCTCCCATTATCTCCAAACGGGAAGAGAAGAATCACTCACACACACACACAACGCGCAGTGATATGAGAACGAGGAGAGGGCTGTGTTATCCGAGAGTGATGAATAGGTGCGTGGAGAATAGCAGCGGAAGAGTGGCGAAGAGAAGGAAGCTGGAGCTCGCCGGAGACTGCCGGAAAATTTTGAAAACCTCGCCGGATTACGCCGGAGGATGCGATTTCTTCGACGCTTTA...

CDS

1 records

下载 CDS FASTA

LOC131025419
ATGAGAACGAGGAGAGGGCTGTGTTATCCGAGAGTGATGAATAGGTGCGTGGAGAATAGCAGCGGAAGAGTGGCGAAGAGAAGGAAGCTGGAGCTCGCCGGAGACTGCCGGAAAATTTTGAAAACCTCGCCGGATTACGCCGGAGGATGCGATTTCTTCGACGCTTTACCGGATGATCTCGTCCTTTCTGTTCTCGGCAAGCTCAGCTCCACCGCGGACTGCCCCGCCGATTTCGTAAACGTTTTGACAACATGCAAAAG...

Protein

1 records

下载 Protein FASTA

XP_057811152.1
MRTRRGLCYPRVMNRCVENSSGRVAKRRKLELAGDCRKILKTSPDYAGGCDFFDALPDDLVLSVLGKLSSTADCPADFVNVLTTCKRLNGLGLHSLVLSKASHKMLAVKASNWSDSAHRFLKLCADSGNIEACHTLGMIRFYCLQNRSSGASLMAKAAISSHAAALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVKQNIAEGRRFLVQANARELAVVLAANPSAVVPRSWLTCNHQR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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