Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G003374

染色体: Chr05 坐标: 44647786-44650892 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G003374
名称SmilChr05G003374
描述COP1-interactive protein 1
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向44647786 - 44650892 / +

ID 对照

NCBI Gene IDLOC131025444
GeneID131025444
locus_tag-
NCBI NameLOC131025444
原始查询LOC131025444

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述COP1-interactive protein 1
产物COP1-interactive protein 1
ArabidopsisAT5G41780 (AT5G41780)
myosin heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:834183]
identity=26.4; qcov=0.992; evalue=1.16e-29; confidence=low
Rice-
-
GOGO:0003779 (actin binding)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131025444

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.40000 XP_057811210.1
2 Cytoplasm 细胞质 0.20000 XP_057811210.1
3 Cytoskeleton 细胞骨架 0.20000 XP_057811210.1
4 Cytosol 细胞质基质 0.20000 XP_057811210.1
5 Spindle pole body Spindle pole body 0.20000 XP_057811210.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:44648699 C T EMS_canonical_SNV CDS_variant 3 B102,B38,B39
Chr5:44649248 A AG 1bp_insertion frameshift_variant 69 A1,A13,A16,A18,A6,B10,B100,B102,B103,B104,B105,B106,B108,B11,B110,B112,B113,B124,B13,B132,B14,B16,B17,B22,B30,B33,B38,B39,B4,B40,B47,B5,B57,B59,B6,B62,B67,B72,B74,B76,B80,B84,B90,B92,B95,C16,C19,C20,C21,C24,C28,C32,C39,C42,C47,C52,C53,C55,C56,C59,C6,C67,C68,C7,C70,C75,C79,C83,C9
Chr5:44649348 G A EMS_canonical_SNV CDS_variant 3 B10,B75,C76
Chr5:44649508 G A EMS_canonical_SNV CDS_variant 4 B21,B68,C35,C48
Chr5:44649579 C CA 1bp_insertion frameshift_variant 1 C5
Chr5:44649579 C CA 1bp_insertion CDS_variant 1 C5
Chr5:44649673 C T EMS_canonical_SNV CDS_variant 1 B75
Chr5:44649804 G A EMS_canonical_SNV CDS_variant 1 B140
Chr5:44649822 C T EMS_canonical_SNV CDS_variant 5 B125,B18,B6,C14,C63
Chr5:44649898 G A EMS_canonical_SNV CDS_variant 3 B21,C35,C48
Chr5:44650053 G A EMS_canonical_SNV CDS_variant 1 B75
Chr5:44650302 C T EMS_canonical_SNV CDS_variant 1 B13

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057955227.1
AAAAAAAAAAAAAAAAAAGTTCATCTCTCTTCAAATTTTTTATCATGAGATTTGCCTTCATTCAGATTGACATTCTCCAAAACTCTGCAAATTTTCAGGGGATGTAATCATGCATGGGAGCTACATTTCTTCAACTGTTAGATAATTGCATGTTTCAAGTAGCACCACTCATCCTTCTCAGATTTGAAGCTTAGCAATGAAGTCCTTTGAGAATCACATAGACCCCGAGAAACAAGAGCAACTGAGACTGGCAAAAATAG...
XM_057955230.1
AAAAAAAAAAAAAAAAAAGTTCATCTCTCTTCAAATTTTTTATCATGAGATTTGCCTTCATTCAGATTGACATTCTCCAAAACTCTGCAAATTTTCAGGGGATGTAATCATGCATGGGAGCTACATTTCTTCAACTGTTAGATAATTGCATGTTTCAAGTAGCACCACTCATCCTTCTCAGATTTGAAGCTTAGCAATGAAGTCCTTTGAGAATCACATAGACCCCGAGAAACAAGAGCAACTGAGACTGGCAAAAATAG...

CDS

4 records

下载 CDS FASTA
LOC131025444
ATGAAGTCCTTTGAGAATCACATAGACCCCGAGAAACAAGAGCAACTGAGACTGGCAAAAATAGATGTTGAGAATAAAGTGAGGAGGATTTTGAAGCTGGCAAAGGGCATAAATGGCAACAAAGAAGGGAACGTGAAGAAGGAAATAATTCATCTAGTTGAAGATTTCCAGCAGCATTATGAATCACTCTACTCTCTGTATGAAGACCTAAGAGGAGAGGCGAAGAACATCGTCCATGGCAGAGACGATTCGGATTCAGA...
LOC131025444
ATGAAGTCCTTTGAGAATCACATAGACCCCGAGAAACAAGAGCAACTGAGACTGGCAAAAATAGATGTTGAGAATAAAGTGAGGAGGATTTTGAAGCTGGCAAAGGGCATAAATGGCAACAAAGAAGGGAACGTGAAGAAGGAAATAATTCATCTAGTTGAAGATTTCCAGCAGCATTATGAATCACTCTACTCTCTGTATGAAGACCTAAGAGGAGAGGCGAAGAACATCGTCCATGGCAGAGACGATTCGGATTCAGA...

Protein

4 records

下载 Protein FASTA
XP_057811210.1
MKSFENHIDPEKQEQLRLAKIDVENKVRRILKLAKGINGNKEGNVKKEIIHLVEDFQQHYESLYSLYEDLRGEAKNIVHGRDDSDSEVYYSPVEGMHKNSRETDDESSDVEDTILKDILTSSSEIKENKFFKDLRVEEPEIEIAKKQWQAEQMKERISRLKGRVSELESICKDKECLQHEKDELEERLTSETKERCIEVEGLMEQVDCLHEELVSVTTRKVELELELNHKYARSGDKESSKAQVKHSKLNQEQMAKTNQE...
XP_057811211.1
MKSFENHIDPEKQEQLRLAKIDVENKVRRILKLAKGINGNKEGNVKKEIIHLVEDFQQHYESLYSLYEDLRGEAKNIVHGRDDSDSEVYYSPVEGMHKNSRETDDESSDVEDTILKDILTSSSEIKENKFFKDLRVEEPEIEIAKKQWQAEQMKERISRLKGRVSELESICKDKECLQHEKDELEERLTSETKERCIEVEGLMEQVDCLHEELVSVTTRKVELELELNHKYARSGDKESSKAQVKHSKLNQEQMAKTNQE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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