当前解析结果
SmilChr05G000676| 统一新 Gene ID | SmilChr05G000676 |
|---|---|
| 名称 | SmilChr05G000676 |
| 描述 | uncharacterized SmilChr05G000676 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 5168610 - 5171815 / - |
| NCBI Gene ID | LOC131025452 |
|---|---|
| GeneID | 131025452 |
| locus_tag | - |
| NCBI Name | LOC131025452 |
| 原始查询 | LOC131025452 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pyrroline-5-carboxylate reductase [Source:NCBI gene (formerly Entrezgene);Acc:825660]; symbol=AT4G03600; hit=AT4G03600; species=arabidopsis; confidence=medium |
| 产物 | pyrroline-5-carboxylate reductase [Source:NCBI gene (formerly Entrezgene);Acc:825660]; symbol=AT4G03600; hit=AT4G03600; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G03600 (AT4G03600)pyrroline-5-carboxylate reductase [Source:NCBI gene (formerly Entrezgene);Acc:825660] identity=48.2; qcov=0.919; evalue=4.26e-36; confidence=medium |
| Rice | Os12g0295600- identity=42.1; qcov=0.893; evalue=2.3e-19; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025452 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057811225.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057811225.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057811225.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811225.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811225.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:5168648 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B35 |
Chr5:5168688 |
A |
AT |
1bp_insertion | frameshift_variant | 160 | A1,A10,A15,A16,A18,A2,A20,A24,A3,A4,A6,A7,A8,B100,B101,B102,B105,B106,B108,B109,B111,B112,B113,B115,B117,B118,B120,B121,B122,B126,B128,B129,B13,B131,B134,B136,B137,B15,B18,B19,B2,B20,B22,B23,B25,B27,B28,B29,B3,B31,B33,B36,B37,B4,B40,B42,B43,B44,B46,B47,B48,B5,B52,B53,B54,B55,B56,B57,B58,B59,B6,B62,B63,B64,B66,B69,B70,B74,B78,B8,B80,B81,B82,B83,B85,B89,B9,B90,B91,B92,B93,B94,B95,B96,B99,C10,C11,C13,C14,C16,C18,C19,C21,C22,C23,C24,C26,C28,C31,C32,C33,C34,C36,C38,C41,C42,C43,C44,C45,C46,C47,C48,C49,C51,C52,C53,C54,C56,C57,C59,C6,C60,C61,C63,C65,C67,C68,C69,C7,C70,C71,C73,C75,C76,C77,C78,C79,C8,C80,C81,C83,C84,C85,C9,D11,D2,D4,D6,D8,D9 |
Chr5:5168708 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr5:5168760 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B21,B78,C45 |
Chr5:5168774 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B11,B139,C48 |
Chr5:5168790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C87 |
Chr5:5168799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr5:5168836 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr5:5168845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr5:5168858 |
ATT |
A |
2bp_deletion | frameshift_variant | 52 | A18,A21,A7,B106,B109,B117,B119,B122,B123,B127,B130,B135,B138,B17,B18,B19,B24,B27,B34,B50,B64,B66,B71,B73,B75,B82,B86,B93,B97,C10,C15,C19,C20,C21,C24,C27,C28,C29,C31,C32,C35,C36,C39,C41,C42,C49,C51,C6,C62,C68,C70,D3 |
Chr5:5168861 |
C |
CGT |
2bp_insertion | frameshift_variant | 50 | A18,A21,A7,B106,B109,B117,B119,B122,B123,B127,B130,B135,B138,B17,B18,B19,B24,B27,B34,B50,B64,B66,B71,B75,B82,B86,B93,B97,C10,C15,C19,C20,C21,C24,C27,C28,C29,C31,C32,C35,C36,C41,C42,C49,C51,C6,C62,C68,C70,D3 |
Chr5:5168864 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。