Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000834`

染色体: Chr05 坐标: 6570507-6579674 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000834`
名称	SmilChr05G000834
描述	uncharacterized SmilChr05G000834
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	6570507 - 6579674 / `+`

ID 对照

NCBI Gene ID	`LOC131025460`
GeneID	`131025460`
locus_tag	`-`
NCBI Name	`LOC131025460`
原始查询	`LOC131025460`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance protein (TIR class) [Source:NCBI gene (formerly Entrezgene);Acc:842403]; symbol=AT1G61100; hit=AT1G61100; species=arabidopsis; confidence=medium
产物	disease resistance protein (TIR class) [Source:NCBI gene (formerly Entrezgene);Acc:842403]; symbol=AT1G61100; hit=AT1G61100; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G61100` (AT1G61100) disease resistance protein (TIR class) [Source:NCBI gene (formerly Entrezgene);Acc:842403] identity=38.4; qcov=0.504; evalue=1.42e-131; confidence=medium
Rice	`Os03g0861100` - identity=29.8; qcov=0.507; evalue=9.32e-66; confidence=low
GO	-
KEGG	-
Pfam	PF28571 (At4g04980_N); PF30468 (CIP7_M); PF30469 (CIP7_N)
InterPro	-
eggNOG	-
NR	GeneID:131025460

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057811237.1`
2	Cytosol	细胞质基质	0.40000	`XP_057811237.1`
3	Nucleus	细胞核	0.00000	`XP_057811237.1`
4	Chromosome	染色体	0.00000	`XP_057811237.1`
5	Centromere	着丝粒	0.00000	`XP_057811237.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:6570801`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B37
`Chr5:6571076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A1,A2
`Chr5:6571512`	`C`	`CCA`	2bp_insertion	frameshift_variant	209	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A3,A4,A5,A6,A7,A8,B1,B10,B100,B101,B103,B104,B105,B107,B108,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B13,B130,B131,B132,B133,B134,B135,B136,B138,B139,B140,B15,B16,B17,B18,B19,B20,B21,B22,B25,B26,B28,B3,B30,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B60,B61,B62,B64,B65,B66,B68,B69,B7,B70,B71,B73,B74,B75,B77,B79,B8,B80,B81,B83,B84,B85,B87,B88,B89,B9,B92,B93,B95,B96,B98,B99,C1,C10,C11,C12,C15,C16,C17,C18,C2,C20,C21,C22,C24,C26,C27,C28,C29,C30,C31,C32,C33,C34,C35,C36,C37,C40,C41,C42,C43,C45,C48,C49,C5,C50,C52,C54,C57,C58,C59,C6,C60,C61,C62,C63,C65,C66,C67,C68,C7,C70,C72,C74,C75,C76,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D2,D3,D4,D6,D7,D8
`Chr5:6571513`	`TGA`	`T`	2bp_deletion	frameshift_variant	209	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A3,A4,A5,A6,A7,A8,B1,B10,B100,B101,B103,B104,B105,B107,B108,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B13,B130,B131,B132,B133,B134,B135,B136,B138,B139,B140,B15,B16,B17,B18,B19,B20,B21,B22,B25,B26,B28,B3,B30,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B60,B61,B62,B64,B65,B66,B68,B69,B7,B70,B71,B73,B74,B75,B77,B79,B8,B80,B81,B83,B84,B85,B87,B88,B89,B9,B92,B93,B95,B96,B98,B99,C1,C10,C11,C12,C15,C16,C17,C18,C2,C20,C21,C22,C24,C26,C27,C28,C29,C30,C31,C32,C33,C34,C35,C36,C37,C40,C41,C42,C43,C45,C48,C49,C5,C50,C52,C54,C57,C58,C59,C6,C60,C61,C62,C63,C65,C66,C67,C68,C7,C70,C72,C74,C75,C76,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D2,D3,D4,D6,D7,D8
`Chr5:6571539`	`T`	`TGC`	2bp_insertion	frameshift_variant	81	A11,A15,A19,A23,A24,B1,B100,B108,B109,B11,B114,B117,B12,B122,B123,B127,B128,B13,B130,B131,B133,B134,B139,B140,B17,B19,B22,B30,B35,B36,B38,B4,B41,B43,B45,B51,B52,B55,B56,B59,B64,B65,B68,B69,B7,B77,B79,B84,B85,B88,B99,C10,C11,C15,C17,C2,C20,C21,C26,C30,C31,C33,C48,C54,C58,C60,C62,C66,C70,C72,C74,C75,C76,C79,C80,C81,C82,C83,C86,C9,D2
`Chr5:6571601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr5:6571970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:6571990`	`GCT`	`G`	2bp_deletion	frameshift_variant	3	B23,B36,C65
`Chr5:6571990`	`GCT`	`G`	2bp_deletion	CDS_variant	3	B23,B36,C65
`Chr5:6572238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr5:6572537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:6572684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811237.1

1793 aa

896

1793

CIP7_N

CIP7_M

At4g04980_N

PF30469 CIP7_N 9-65 aa PF30468 CIP7_M 87-238 aa PF28571 At4g04980_N 1054-1129 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811237.1`	Pfam	`PF30469`	CIP7_N	Domain	9	65	1e-25	90.4	CIP7 N-terminal domain
`XP_057811237.1`	Pfam	`PF30468`	CIP7_M	Domain	87	238	3.4e-46	157.9	CIP7 middle helical domain
`XP_057811237.1`	Pfam	`PF28571`	At4g04980_N	Domain	1054	1129	1.6e-18	67.2	At4g04980 N-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955254.1
CTCAACCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACATAGAACTCTCACACTTCCCATGTGCACTGCTCCATCAGTTCTTGCTGGCTCTCTCTCATGTCCAGTTAAGACTTAAAAAAAAGGTTTTTGAATGTCACGTTCAATAACATGAACTTGCAGTTCAACACTCCATAACTTTAGAGCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTCTCCATCTCTCCTCACACTGTGGGA...

CDS

1 records

下载 CDS FASTA

LOC131025460
ATGGATTCCAATACCATTCTCGATTATGCTCTGTTCCAACTCACCCCAACAAGAACGAGATGCGATCTTGTTGTGTTTTATGGGAAGAAGAGCGAGAAACTGGCATCTGGGCTTTTGGAACCCTTCGTTGCTCACTTGAAATATGCTAAAGATCAGATTCCAAAAGGGGGATATTCGATTACTCTTCGCCCCCCAAGTGATGATGCCTCATGGTTCACGAAGGCCACATTTCAAAGATTTGTACGTTTTGTGAGCACGCC...

Protein

1 records

下载 Protein FASTA

XP_057811237.1
MDSNTILDYALFQLTPTRTRCDLVVFYGKKSEKLASGLLEPFVAHLKYAKDQIPKGGYSITLRPPSDDASWFTKATFQRFVRFVSTPEILERIIRIEREILQIDSSTQSNENPTVDEAGHPMEGNISVADGNLKKSTNSSKLSSEEEDHGAELREHSRARLQRLMDTRKALLLKEQAMAYARAVVAGYEMEDIDDLICFADTFGASRLREACTDFKELYNRKHSDDQWMDELAAVQASSVTDLPYLATSGIMLTGENFHG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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