当前解析结果
SmilChr05G001018| 统一新 Gene ID | SmilChr05G001018 |
|---|---|
| 名称 | SmilChr05G001018 |
| 描述 | uncharacterized SmilChr05G001018 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 8338037 - 8340830 / + |
| NCBI Gene ID | LOC131025476 |
|---|---|
| GeneID | 131025476 |
| locus_tag | - |
| NCBI Name | LOC131025476 |
| 原始查询 | LOC131025476 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0597300; species=rice; confidence=low |
| 产物 | hit=Os12g0597300; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=27.8; qcov=0.671; evalue=3.64e-52; confidence=low |
| Rice | Os12g0597300- identity=29.7; qcov=0.672; evalue=1.74e-64; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025476 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057811254.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057811254.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057811254.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057811254.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057811254.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:8338056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:8338064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:8338072 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr5:8338076 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | C49,D10 |
Chr5:8338076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C49,D10 |
Chr5:8338097 |
CG |
C |
1bp_deletion | frameshift_variant | 38 | A2,A9,B114,B119,B120,B121,B128,B129,B17,B23,B40,B47,B50,B59,B6,B69,B75,B85,B88,B89,B93,C11,C16,C26,C32,C39,C43,C56,C59,C60,C62,C69,C77,C78,C80,C81,D11,D7 |
Chr5:8338110 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B123,B26,B46,C37 |
Chr5:8338132 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr5:8338144 |
TG |
T |
1bp_deletion | frameshift_variant | 9 | A18,B129,B51,B54,B57,B86,B87,C31,C4 |
Chr5:8338151 |
G |
GA |
1bp_insertion | frameshift_variant | 52 | A15,A16,A7,B1,B107,B110,B114,B122,B126,B132,B134,B137,B19,B2,B25,B28,B32,B34,B35,B37,B39,B47,B52,B65,B69,B7,B78,B86,B94,C1,C10,C15,C17,C25,C28,C30,C32,C33,C35,C36,C37,C41,C44,C52,C56,C68,C74,C8,C84,C86,C9,D11 |
Chr5:8338193 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B13,D10 |
Chr5:8338216 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,B13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811254.1PF00872
Transposase_mut 380-478 aa
PF10551
MULE 381-475 aa
PF04434
SWIM 625-654 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811254.1 |
Pfam | PF00872 |
Transposase_mut | Family | 380 | 478 | 4.2e-10 | 39.8 | Transposase, Mutator family |
XP_057811254.1 |
Pfam | PF10551 |
MULE | Domain | 381 | 475 | 1.9e-19 | 70.5 | MULE transposase domain |
XP_057811254.1 |
Pfam | PF04434 |
SWIM | Domain | 625 | 654 | 1e-08 | 35.2 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。