当前解析结果
SmilChr05G001508| 统一新 Gene ID | SmilChr05G001508 |
|---|---|
| 名称 | SmilChr05G001508 |
| 描述 | calcium-transporting ATPase 12, plasma membrane-type-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 13839718 - 13844321 / + |
| NCBI Gene ID | LOC131025541 |
|---|---|
| GeneID | 131025541 |
| locus_tag | - |
| NCBI Name | LOC131025541 |
| 原始查询 | LOC131025541 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calcium-transporting ATPase 12, plasma membrane-type-like |
| 产物 | calcium-transporting ATPase 12%2C plasma membrane-type-like |
| Arabidopsis | AT3G63380 (AT3G63380)ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825513] identity=34.8; qcov=0.895; evalue=3.13e-145; confidence=low |
| Rice | Os10g0418100 (ACA8)- identity=33.2; qcov=0.914; evalue=4e-116; confidence=low |
| GO | GO:0000166 (nucleotide binding); GO:0005388 (P-type calcium transporter activity); GO:0043231 (intracellular membrane-bounded organelle) |
| KEGG | - |
| Pfam | PF00122 (E1-E2_ATPase); PF00689 (Cation_ATPase_C); PF00690 (Cation_ATPase_N); PF13246 (Cation_ATPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025541 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057811317.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057811317.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057811317.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057811317.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811317.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:13839826 |
GC |
G |
1bp_deletion | frameshift_variant | 2 | B35,C71 |
Chr5:13839826 |
GC |
G |
1bp_deletion | CDS_variant | 2 | B35,C71 |
Chr5:13839890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr5:13839893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B38,B39,B79,B86 |
Chr5:13839987 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:13840134 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B61 |
Chr5:13840134 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B61 |
Chr5:13840145 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B119 |
Chr5:13840145 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr5:13840577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,B117,B46 |
Chr5:13840605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B25,C63,D10 |
Chr5:13840761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B38,B39,B79,B86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811317.1PF00690
Cation_ATPase_N 29-102 aa
PF00122
E1-E2_ATPase 153-242 aa
PF13246
Cation_ATPase 461-555 aa
PF00689
Cation_ATPase_C 736-873 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811317.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 29 | 102 | 2.2e-05 | 24.7 | Cation transporter/ATPase, N-terminus |
XP_057811317.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 153 | 242 | 3.6e-13 | 49.9 | P-type ATPase actuator domain |
XP_057811317.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 461 | 555 | 7.6e-08 | 33.1 | P-type ATPase, cytoplasmic domain N |
XP_057811317.1 |
Pfam | PF00689 |
Cation_ATPase_C | Family | 736 | 873 | 2e-15 | 57.8 | Cation transporting ATPase, C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。