当前解析结果
SmilChr05G001637| 统一新 Gene ID | SmilChr05G001637 |
|---|---|
| 名称 | SmilChr05G001637 |
| 描述 | uncharacterized SmilChr05G001637 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 15324751 - 15335331 / - |
| NCBI Gene ID | LOC131025564 |
|---|---|
| GeneID | 131025564 |
| locus_tag | - |
| NCBI Name | LOC131025564 |
| 原始查询 | LOC131025564 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=26.4; qcov=0.117; evalue=2.58e-09; confidence=weak |
| Rice | Os08g0202300- identity=31.4; qcov=0.299; evalue=6.61e-59; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025564 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057811344.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057811344.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057811344.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811344.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811344.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:15324761 |
TTC |
T |
2bp_deletion | frameshift_variant | 2 | C45,D10 |
Chr5:15324761 |
TTC |
T |
2bp_deletion | CDS_variant | 2 | C45,D10 |
Chr5:15324765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B140,B24,B55,C1,D9 |
Chr5:15324780 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,C32 |
Chr5:15324790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C1,C53 |
Chr5:15324796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,B16 |
Chr5:15324800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B55,B81,C1,C53 |
Chr5:15324828 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B3,B65,C13,C45,C75 |
Chr5:15324850 |
A |
AC |
1bp_insertion | frameshift_variant | 3 | B133,B90,C86 |
Chr5:15324850 |
A |
AC |
1bp_insertion | CDS_variant | 3 | B133,B90,C86 |
Chr5:15324858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,D9 |
Chr5:15324861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C1,C55,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811344.1PF00078
RVT_1 559-718 aa
PF17919
RT_RNaseH_2 781-879 aa
PF17917
RT_RNaseH 809-908 aa
PF13456
RVT_3 943-1062 aa
PF17921
Integrase_H2C2 1151-1202 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811344.1 |
Pfam | PF00078 |
RVT_1 | Domain | 559 | 718 | 8.7e-32 | 111.3 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057811344.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 781 | 879 | 1.3e-18 | 67.6 | RNase H-like domain found in reverse transcriptase |
XP_057811344.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 809 | 908 | 3.8e-12 | 47.0 | RNase H-like domain found in reverse transcriptase |
XP_057811344.1 |
Pfam | PF13456 |
RVT_3 | Domain | 943 | 1062 | 5e-18 | 65.9 | Reverse transcriptase-like |
XP_057811344.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1151 | 1202 | 1.2e-09 | 38.8 | Integrase zinc binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。