当前解析结果
SmilChr05G001706| 统一新 Gene ID | SmilChr05G001706 |
|---|---|
| 名称 | SmilChr05G001706 |
| 描述 | protein DETOXIFICATION 33-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 16296024 - 16296868 / + |
| NCBI Gene ID | LOC131025572 |
|---|---|
| GeneID | 131025572 |
| locus_tag | - |
| NCBI Name | LOC131025572 |
| 原始查询 | LOC131025572 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein DETOXIFICATION 33-like |
| 产物 | protein DETOXIFICATION 33-like |
| Arabidopsis | AT1G47530 (AT1G47530)MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:841162] identity=56.2; qcov=0.685; evalue=4.54e-61; confidence=high |
| Rice | Os03g0626700- identity=62.9; qcov=0.685; evalue=5.76e-72; confidence=high |
| GO | GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF01554 (MatE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025572 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057811355.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057811355.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057811355.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057811355.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057811355.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:16296092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr5:16296108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr5:16296114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr5:16296158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B96 |
Chr5:16296166 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B36,B46 |
Chr5:16296168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C60 |
Chr5:16296170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr5:16296171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B86,C70 |
Chr5:16296258 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B56 |
Chr5:16296271 |
AG |
A |
1bp_deletion | frameshift_variant | 10 | B112,B115,B13,B138,B60,B64,B77,C19,C33,C48 |
Chr5:16296272 |
G |
GA |
1bp_insertion | frameshift_variant | 23 | B119,B122,B123,B125,B132,B137,B26,B28,B31,B54,B59,B79,B95,B98,C22,C39,C42,C47,C56,C65,C68,C8,D7 |
Chr5:16296299 |
G |
GT |
1bp_insertion | frameshift_variant | 17 | B10,B114,B132,B37,B68,B69,B78,B8,B85,B90,B92,C12,C15,C20,C35,C81,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057811355.1PF01554
MatE 82-194 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811355.1 |
Pfam | PF01554 |
MatE | Family | 82 | 194 | 9.5e-23 | 81.4 | MatE |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。