Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002455

染色体: Chr01 坐标: 42152156-42156065 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002455
名称SmilChr01G002455
描述uncharacterized SmilChr01G002455
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向42152156 - 42156065 / -

ID 对照

NCBI Gene IDLOC131025595
GeneID131025595
locus_tag-
NCBI NameLOC131025595
原始查询LOC131025595

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述dimethylallyl, adenosine tRNA methylthiotransferase [Source:NCBI gene (formerly Entrezgene);Acc:842577]; symbol=AT1G62780; hit=AT1G62780; species=arabidopsis; confidence=high
产物dimethylallyl, adenosine tRNA methylthiotransferase [Source:NCBI gene (formerly Entrezgene);Acc:842577]; symbol=AT1G62780; hit=AT1G62780; species=arabidopsis; confidence=high
ArabidopsisAT1G62780 (AT1G62780)
dimethylallyl, adenosine tRNA methylthiotransferase [Source:NCBI gene (formerly Entrezgene);Acc:842577]
identity=63.5; qcov=1; evalue=1.2e-108; confidence=high
RiceOs04g0105700
-
identity=62.3; qcov=0.924; evalue=5.67e-78; confidence=high
GOGO:0009570 (chloroplast stroma)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131025595

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057811379.1
2 Chloroplast stroma 叶绿体基质 1.00000 XP_057811379.1
3 Chloroplast thylakoid 类囊体 0.20000 XP_057811379.1
4 Nucleus 细胞核 0.00000 XP_057811384.1
5 Chromosome 染色体 0.00000 XP_057811384.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:42153053 AC A 1bp_deletion frameshift_variant 3 B1,B7,C35
Chr1:42153053 AC A 1bp_deletion CDS_variant 3 B1,B7,C35
Chr1:42153070 G A EMS_canonical_SNV CDS_variant 4 B27,B35,B76,D10
Chr1:42153481 C T EMS_canonical_SNV CDS_variant 3 B100,B107,C5
Chr1:42154527 C T EMS_canonical_SNV CDS_variant 4 A3,B10,B113,B25
Chr1:42154578 C T EMS_canonical_SNV CDS_variant 1 D10
Chr1:42154591 G A EMS_canonical_SNV CDS_variant 4 B103,C37,C56,C9

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057955401.1
AATGGAATTTAATTGAAATATTAACCTTTTACAATAACTTCTTCTTCTTTCTTTTTTTTTTTCATGAAATCAGTATGTTTAAGAAGTTTAATTAGATTTGAATAATCAGACATATTAATTCACTTATTTTATCATATACAGTTTAATGATACTCAGCTCCACTTAATTACCTTATTCCCCATGGCTATGGATAGCGTTAGCCATATCCATAAATCCTCTCAAGAAATTCAATATGAAGTTTCCTGACACGGTTTTGAGCA...
XM_057955396.1
TACTCAGCTCCACTTAATTACCTTATTCCCCATGGCTATGGATAGCGTTAGCCATATCCATAAATCCTCTCAAGAAATTCAATATGAAGTTTCCTGACACGGTTTTGAGCAAAATCCAAACAGATAACCAACAAGCTTCTGCTCAAACAAAGGCCGCTCATGGCCTCTTCTCTTCGCTTCAGCTGCGCAGTTCCTATCTCAATCTCCAGATCGACAAAACCCAGAAATCAACCAGCTAAAATTCGCTGCATAGGATGGGA...

CDS

2 records

下载 CDS FASTA
LOC131025595
ATGGCCTCTTCTCTTCGCTTCAGCTGCGCAGTTCCTATCTCAATCTCCAGATCGACAAAACCCAGAAATCAACCAGCTAAAATTCGCTGCATAGGATGGGACCCGGAAGGCGTGCTCGGAGCTCCGAAGCCAGGACACATAGCGAGGCTGGAATTCAAGCGACGTCTCGATAAGGATTCCGAGGCCCGAGAAGCATTTGAACGCCAAGTCCGAGAAGAGAAAGACCGCACGCGAAGACTTCGCGAGTCTCGGGTGATACC...
LOC131025595
ATGGCCTCTTCTCTTCGCTTCAGCTGCGCAGTTCCTATCTCAATCTCCAGATCGACAAAACCCAGAAATCAACCAGCTAAAATTCGCTGCATAGGATGGGACCCGGAAGGCGTGCTCGGAGCTCCGAAGCCAGGACACATAGCGAGGCTGGAATTCAAGCGACGTCTCGATAAGGATTCCGAGGCCCGAGAAGCATTTGAACGCCAAGTCCGAGAAGAGAAAGACCGCACGCGAAGACTTCGCGAGTCTCGGGTGATACC...

Protein

2 records

下载 Protein FASTA
XP_057811379.1
MASSLRFSCAVPISISRSTKPRNQPAKIRCIGWDPEGVLGAPKPGHIARLEFKRRLDKDSEAREAFERQVREEKDRTRRLRESRVIPDTVEELVEYFLDTEAQEIEFEISRLRPRLNEEFFSHLKLELGKLKFSVSKTQDVEDRVIELETLQKALEEATEAYDKMQAELVTARESLKRILQSSDVKATLLDLVGENSLNRSLLTLLDQNIASAYQGNQVREFIYEMLLALFCLDGGSFLVLRFGFRDLKSIKVL
XP_057811384.1
MASSLRFSCAVPISISRSTKPRNQPAKIRCIGWDPEGVLGAPKPGHIARLEFKRRLDKDSEAREAFERQVREEKDRTRRLRESRVIPDTVEELVEYFLDTEAQEIEFEISRLRPRLNEEFFSHLKLELGKLKFSVSKTQDVEDRVIELETLQKALEEATEAYDKMQAELVTARESLKRILQSSDVKATLLDLVGENSLNRSLLTLLDQNIASAYQGNQKQAAEYMEKIRGAMLKYITV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器