当前解析结果
SmilChr05G002033| 统一新 Gene ID | SmilChr05G002033 |
|---|---|
| 名称 | SmilChr05G002033 |
| 描述 | uncharacterized SmilChr05G002033 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 21152731 - 21157477 / - |
| NCBI Gene ID | LOC131025643 |
|---|---|
| GeneID | 131025643 |
| locus_tag | - |
| NCBI Name | LOC131025643 |
| 原始查询 | LOC131025643 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=26.2; qcov=0.282; evalue=3.4e-37; confidence=weak |
| Rice | Os06g0484800- identity=30; qcov=0.518; evalue=2.03e-101; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025643 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057811426.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057811426.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057811426.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057811426.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057811426.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:21152773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr5:21152805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr5:21152869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,B18,B23 |
Chr5:21152875 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr5:21152897 |
C |
CA |
1bp_insertion | frameshift_variant | 19 | A20,B105,B126,B26,B33,B42,B51,B62,B9,C18,C33,C34,C37,C40,C49,C65,C67,C7,C82 |
Chr5:21152906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr5:21152910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr5:21152924 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr5:21152932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr5:21152947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C67 |
Chr5:21152951 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr5:21153005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811426.1PF00078
RVT_1 322-582 aa
PF13966
zf-RVT 848-920 aa
PF13456
RVT_3 1050-1169 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811426.1 |
Pfam | PF00078 |
RVT_1 | Domain | 322 | 582 | 2.6e-28 | 100.0 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057811426.1 |
Pfam | PF13966 |
zf-RVT | Domain | 848 | 920 | 1e-14 | 55.6 | zinc-binding in reverse transcriptase |
XP_057811426.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1050 | 1169 | 2.2e-15 | 57.4 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。